Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3710 atgggacCTCTTGGTCTTGGAGCCTTCCCTGATGGAGAATGGGATTGCTTTGGCAAGATGTTGGCCAATGAAGCCCATTATTGCTTACCACAATTACTTGGGGAAGATGATGGGAATGCTGGAATGCAATCCATGTTTTGCTCCACTCCTGATGCTGGGGGTAATAAGAGTATGTTTTACTCTTTTGATTCTCAGAACTCTAACTTGCAGTATATTTCTCAAGAAAGCAGTCACAATAGCAATTGTAGTGGCCATGGGATCATCATGGCCAATCAGGATCATACAAACTACCTTTTTGGCTATCTTGATCATGTGCTAGCAAATAGTACATCCATGGATGAGACAAACCCTGGCTCTTGTGTCCAATCTGACATTGTCATGAAAGAGAATGTGCAACATTGCACGAAGAACCAGAAACTTGACAATAGGAATCAGGCAGAAAATCAGATTAATGCAGGTTCAGATGGACATAGTTCTAGTAGTTACACCCCAGAGGATGACAATGATTCTAATGTAAACAGTGGAGGACCTACTTCTGCTCTCAACTTAAAAGGGAAAACAAAAGCCAGTAGGGGATCAGCAACAGATCCTCAGAGTCTTTATGCAAGGaaaagaagagagagaataaatgaGAGGCTAAGAATTCTACAGAATCTTGTCCCCAACGGAAcaaagGTTGATATAAGCACTATGCTTGAAGAGGCAGTCCATTACGTGAAATTTTTGCAGCTCCAGATCAAGCTTTTAAGCTCCGATGATTTGTGGATGTACGCGCCGATAGCTTATAATGGACTTGACATTGTACTCAATCTCAGTCGGGAGAGTTCTCCACCTTTGTGA 840 0.4071 MGPLGLGAFPDGEWDCFGKMLANEAHYCLPQLLGEDDGNAGMQSMFCSTPDAGGNKSMFYSFDSQNSNLQYISQESSHNSNCSGHGIIMANQDHTNYLFGYLDHVLANSTSMDETNPGSCVQSDIVMKENVQHCTKNQKLDNRNQAENQINAGSDGHSSSSYTPEDDNDSNVNSGGPTSALNLKGKTKASRGSATDPQSLYARKRRERINERLRILQNLVPNGTKVDISTMLEEAVHYVKFLQLQIKLLSSDDLWMYAPIAYNGLDIVLNLSRESSPPL 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3710 279 MobiDBLite consensus disorder prediction 136 201 - -
Ssu1g3710 279 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 123 277 - -
Ssu1g3710 279 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 5 132 - -
Ssu1g3710 279 Gene3D - 195 251 IPR036638 GO:0046983
Ssu1g3710 279 SMART finulus 199 248 IPR011598 GO:0046983
Ssu1g3710 279 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 123 277 - -
Ssu1g3710 279 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 5 132 - -
Ssu1g3710 279 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 193 258 IPR036638 GO:0046983
Ssu1g3710 279 Pfam Helix-loop-helix DNA-binding domain 203 243 IPR011598 GO:0046983
Ssu1g3710 279 MobiDBLite consensus disorder prediction 136 197 - -
Ssu1g3710 279 CDD bHLH_AtIND_like 194 256 - -
Ssu1g3710 279 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 193 242 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3710 Ssu-Chr1 93409871 93411338 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3710 152 273 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 76.230 9.59e-58 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu1g3710 HLH 1.2e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3710 - - gmx:100779202 385.956