Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3706 ATGGATGATCTTTCCTCCAGCCTTCTGTGCCAAGAAAACGAAACGTGTTTGGAAGAAGGAGGTGAAGAATTAGAATACCCATTCGTTGAATCACAACAGGATTGTGGGGTTTCGGAGGATGAGCATGTGGGAATTTTGATTGAGAGAGAGATGGTTCTTGGGTTCAAAAGGGACGAGACTCTGGTGTTTGGGGACTGGGTGAAACGTGCACGCATGGAAACAatcaattggattctcaaaACAAGAGCAACATTGGGTTTTCGCTTCGAAACGGCTTATTTGTCAGTCACATACTTCGATCGATTTCTTTCCAGAAGGTCCATTGATAGTGAAAAGTGTTGGGCAATTCGGTTGCTATCTATTGCATGCCTCTCTCTGGCTGCAAAGATGGAGGAGTGCAATGTGCCAGGGCTATCAGAGTTCAAATCGGATGATTATTCCTTTGAGGGAAAAGTGATTCAGAAAATGGAGCTTTTGGTGCTGAGCACATTGGAGTGGAAAATGGGTATCATCACTCCCTTtgattttctttcctatttcatCACAAAGTTCTGCGAAGAATCCCCATCAAGTCCTATTTTTTTCAAGACCATGCAACTCATCTTCACCACAATGAAAGAGGTCAATTTAATGGATCACAAGCCATCAGTTATTGCCGCGGCTGCTGCTTTGGTGGCAATGGATCAACAATTGACGATAGAAGCAGTGGAGTTGAAGATGAGTTCAATTCCACAACATAGGCTTCTAGAACCTAAAGATGTGTTCGAGTACTACAATCTAATTCAAAGATTATACGAGGAGAACACCAAAAGAGACACGCATACGCCAATTGAGATGACAGAGAGTTCTCGAGTTACTTCTTCTGCAGCAATGGCAAAGAGAAGAAGACTCACATTCAGTGATGATGAAGGAAGTTATGATGGGAAGGGACACCGCTAg 939 0.4185 MDDLSSSLLCQENETCLEEGGEELEYPFVESQQDCGVSEDEHVGILIEREMVLGFKRDETLVFGDWVKRARMETINWILKTRATLGFRFETAYLSVTYFDRFLSRRSIDSEKCWAIRLLSIACLSLAAKMEECNVPGLSEFKSDDYSFEGKVIQKMELLVLSTLEWKMGIITPFDFLSYFITKFCEESPSSPIFFKTMQLIFTTMKEVNLMDHKPSVIAAAAALVAMDQQLTIEAVELKMSSIPQHRLLEPKDVFEYYNLIQRLYEENTKRDTHTPIEMTESSRVTSSAAMAKRRRLTFSDDEGSYDGKGHR 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3706 312 PANTHER CYCLIN-D5-1 39 278 - -
Ssu1g3706 312 PANTHER CYCLINS 39 278 IPR039361 -
Ssu1g3706 312 Gene3D - 64 163 - -
Ssu1g3706 312 SUPERFAMILY Cyclin-like 154 243 IPR036915 -
Ssu1g3706 312 MobiDBLite consensus disorder prediction 272 292 - -
Ssu1g3706 312 Gene3D - 164 289 - -
Ssu1g3706 312 SUPERFAMILY Cyclin-like 31 168 IPR036915 -
Ssu1g3706 312 CDD CYCLIN 71 161 IPR013763 -
Ssu1g3706 312 Pfam Cyclin, C-terminal domain 171 278 IPR004367 -
Ssu1g3706 312 SMART cyclin_7 76 162 IPR013763 -
Ssu1g3706 312 Pfam Cyclin, N-terminal domain 69 168 IPR006671 -
Ssu1g3706 312 SMART Cyclin_C_2 171 290 IPR004367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3706 Ssu-Chr1 93350477 93351871 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3706 8 243 Core Cell Cycle Gene Families AT4G37630 37.349 3.89e-45 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3706 K18811 - gmx:100798728 540.806