Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3703 atgGCTCCTGCCGAGGCCCCTGAAATCAACCTTGAACCCGAAAATTGCCCTCAAGCGGTGATCGAATGGTTCAACCTCACATCACAACCAAATTACAAACGCCAATGTAAGTTGAGCAGGGACCTATCCTTGAAAGCGAAGAAGCATCTTCGTTATTTGGGTTGGAAGTTTTGGTATGTTCACAAGCAAGGAAAGTGGGAATTGCGTTATACATCACCCATCACCGGCAAGAATTACATTTCTCTCAGAAGGGCATGCCAAGGCTGCATGGAAGAGGGAGGGTGCAATGACAACCCTCAAAATGTTGAAGAAAACAACGATCAGCAATGTCCTTCATCTTCTGCACCAAAGAAGGAGACAAAGAAACCAAGCATAGAAGAGGGAGAGTGCAATGGCAACCCTCAAAATGTTGAAGAAAACAACGATCAGCACTACCCTTCATCTTCTGCACCAAAGAAGGAGACAAAGAAACCaagaaaatgcaagaaaaaaacgAGGATGCAGCCAAGAAAACGCAAAAAAAGACAAAgggatgatgatggtgatgagtTAGGAGAAGTCTCTAGTTCTATACATGGTAGAAGAGGTGCGGTTCTCCCTTGGTTAATAGATAATAATGTGGTGGGTTTATATTCCGTAGTATTCTGCCGTGGTGCAAATAACGTGACCAAGAAAGGGAAGCTATGGCGTCGTGGCATAGTTTGTGAGTGTTGCAGTGTGTTTTTCTCTCTTACTCGCTTTGAGGATCATGCAGGGTGCAACAAGCACAGACCATCTGCTAGCATTTTCTTGGAAGACGGAAGGTCATTGTTGGATTGCCAAAAAGAAGCGTTGAGTTCTCAGCAAAACGTGAGTGGTTtcatggaagaagaagaagaaagggatCACCGTGGGTATCAAAATGATAGCATTTGTTTCCTTTGTCGTTATGGGGGCGAACTAGTGTTATGTGATCGATGCCCCTCCTCGTTCCACCTCAGCTGTTTAGGGCTAGACCTTGTTCCTGACGGTGATTGGTTCTGTTCAGCCTGTTGTTGCAAAATATGCAAGCGACCCAGACACAAAGAAGATTGTGCTGATAATGTGGATGTTGACAGTGTTCTGATTTGTCATCAATGTGAGCGAAGATACCACGTTGGGTGCTTAAAAGGTCTAGGCTTCACTGGGAAGGAAATCCATCTtgataacataaatataaattggttTTGCAGTAGTGCTTGTGAGAAGATATTTTTCAGTCTGCAGAAGCTGATGGGAAAACCTATTCGTGTTGGCGGGGATAATTTAACATGGACATTGTTGAAGGCTGTGAAAAGTGATAACATTGGAGAATCTGATCGTACTTGGAATGAAGTTGAACGTTCGAGTCAAAAGTTGAGTGTTGCTCTTGGTGTATTGCGTGAGTGTTTTGATCCAGTTATTGATGCTTTCTTCGGGAGAGATATGATGGCAGAAGTTGTTTTCAGCAGAGGTTCAGAACTTAATCGTTTGAATTTTCGTGGTTTCTATACTGTGGTTCTGGAGAGGGACGAGGAAGTGATCTCTGTTGCCACTGTAAGGATTTTTGACAAGAGAGTTGCAGAATTACCTTTTGTGGCTACCAGGATGCAGTTTAGAAGACTAGGAATGTGTGGCATGTTGATGAACGAGATTGAGAAGCAGCTGACTGAATTGGGAGTAGAGAGGATGGTTTTGCCTTCCGCGCCTAATGTGATTGATACCTGGATAAACTCATTTGGCTTTACGAGGATGACACGTTCAGATAAGTCTCAGTTTCTTGATTATGTTTTTCTGGACTTTGAGGGCACCACCATGTGCCATAAACTATTGGTGAAACAAATTGATACTGCCGCATAA 1857 0.4157 MAPAEAPEINLEPENCPQAVIEWFNLTSQPNYKRQCKLSRDLSLKAKKHLRYLGWKFWYVHKQGKWELRYTSPITGKNYISLRRACQGCMEEGGCNDNPQNVEENNDQQCPSSSAPKKETKKPSIEEGECNGNPQNVEENNDQHYPSSSAPKKETKKPRKCKKKTRMQPRKRKKRQRDDDGDELGEVSSSIHGRRGAVLPWLIDNNVVGLYSVVFCRGANNVTKKGKLWRRGIVCECCSVFFSLTRFEDHAGCNKHRPSASIFLEDGRSLLDCQKEALSSQQNVSGFMEEEEERDHRGYQNDSICFLCRYGGELVLCDRCPSSFHLSCLGLDLVPDGDWFCSACCCKICKRPRHKEDCADNVDVDSVLICHQCERRYHVGCLKGLGFTGKEIHLDNININWFCSSACEKIFFSLQKLMGKPIRVGGDNLTWTLLKAVKSDNIGESDRTWNEVERSSQKLSVALGVLRECFDPVIDAFFGRDMMAEVVFSRGSELNRLNFRGFYTVVLERDEEVISVATVRIFDKRVAELPFVATRMQFRRLGMCGMLMNEIEKQLTELGVERMVLPSAPNVIDTWINSFGFTRMTRSDKSQFLDYVFLDFEGTTMCHKLLVKQIDTAA 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3703 618 MobiDBLite consensus disorder prediction 129 148 - -
Ssu1g3703 618 SUPERFAMILY FYVE/PHD zinc finger 291 354 IPR011011 -
Ssu1g3703 618 CDD NAT_SF 505 565 - -
Ssu1g3703 618 Gene3D - 447 616 - -
Ssu1g3703 618 PANTHER DUF724 DOMAIN-CONTAINING PROTEIN 4-RELATED 7 612 - -
Ssu1g3703 618 Pfam Tify domain binding domain 226 277 IPR032308 -
Ssu1g3703 618 ProSiteProfiles Zinc finger PHD-type profile. 302 347 IPR019787 -
Ssu1g3703 618 MobiDBLite consensus disorder prediction 103 188 - -
Ssu1g3703 618 MobiDBLite consensus disorder prediction 173 188 - -
Ssu1g3703 618 Pfam PHD-finger 304 346 IPR019787 -
Ssu1g3703 618 Pfam Acetyltransferase (GNAT) family 492 570 IPR000182 GO:0016407
Ssu1g3703 618 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 496 594 IPR016181 -
Ssu1g3703 618 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 7 612 - -
Ssu1g3703 618 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 346 410 IPR013083 -
Ssu1g3703 618 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 464 615 IPR000182 GO:0016407
Ssu1g3703 618 MobiDBLite consensus disorder prediction 155 172 - -
Ssu1g3703 618 SMART PHD_3 346 407 IPR001965 -
Ssu1g3703 618 SMART PHD_3 304 345 IPR001965 -
Ssu1g3703 618 MobiDBLite consensus disorder prediction 103 118 - -
Ssu1g3703 618 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 250 345 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3703 Ssu-Chr1 93265548 93267404 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3703 42 558 PHD Transcription Factor Family AT5G58610 34.295 2.34e-92 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Ssu1g3703 Acetyltransf_1 7.6e-05 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3703 - - gmx:102668789 769.615