Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3690 ATGGAGGACGCATTTGCCAGATCTATTCCCGAGGTCCTTGATTTCTTTGGAGTGGACCCGACTAAGGGTTTATCTGATGCCGAGGTAGTACAACATGCTAGACTTTATGGAAAAAACGGGGCTCCTTTTTGGAAATTGGTTTTGAAGCAATTTGATGATTTGCTTGTAAAGATACTAATTGCAGCTgctcttatatcttttattctGGCGTTAATTAATGGAGAAACAGGCTTGATGGCATTTCTGGAGCCTTCTGTTATTCTGATGATATTGGCAGCAAATGCAGCAGTCGGAGTGATTACAGAAAAAAACGCTGAAAAAGCTCTTGAGGAGCTACGTGCCTATCAAGCTGATGTGGCAACTGTCTTGCGCAATGGTTGTTTTTCCATACTTCCTGCAACTGAACTTGTTCCTGGGGATATTGTGGAAGTTTCTGTGGGGTGTAAAATTCCTGCTGATATGAGGATGATTGAGATGCTAAGCAATCAAGTGCGTGTTGATCAAGCTATTCTTACAGGTGAGAGCAGCTCTGTGGAGAAAGAGCTtaaaacaaccacaacaacaaatgCTGTATACCAAGACAAAACAAATATTCTGTTCTCGGGTACGGTTATGGTTGCTGGTAGAGCAAGAGCTGTTGTGGTGGGAGTTGGTCCTAACACTGCCATGGGCAGCATACGTGATTCAATGTTGCGAACAGAGGATGAGGTGACACCGTTGAAAAAGAAGCTGGACGAGTTTGGTACATTTTTGGCCAAGGTTATAGCAGGGATTTGTGTCTTGGTGTGGATTGTAAATATTGGTCACTTTCGCGACCCTTCTCATGGTGGTTTCTTGCGTGGTgcaattcattattttaagATTGCAGTTGCTCTGGCAGTTGCAGCAATTCCTGAAGGGCTCCCTGCAGTTGTTACAACgtGTTTGGCTCTTGGAACAAAGCGTATGGCTAGGTTGAATGCCATTGTTCGCTCCTTGCCATCGGTTGAGACGTTGGGCTGCACCACTGTTATTTGCAGTGACAAAACTGGGACTCTAACTACTAATATGATGTCAGTGGCAAAGATATGTGTTGTTGAATCTGCAAAACGTGGTCCAGTTGTTTCTGAATACAGTGTCAGTGGAACAACATATGCACCTGAAGGCACAATATTTGACAGTACAGGGATGCAGCTTGACTTTCCTGCTCAATTACCATGTCTTCTTCACATGGCAATGTGTTCTGCTCTTTGTAATGAATCAACCCTGCAGTATAATCCTGATAAAGGGAGTTATGAAAAAATTGGTGAGTCAACTGAAGTGGCATTACGTGTCTTGGCAGAAAAGGTTGGTCTCCCTGGTTTCAATTCTATGCCATCAGCCTTGAATATGTTGACTAAGCATGAACGTGCTTCTTACTGTAACCATTATTGGGAGGAACAATTTAGAAAGATATATGTTTTGGAATTTTCTCGAGATCGGAAAATGATGAGTGTCCTTTGCAGCCGGAACCAGATGCATGTTTTGTTCTCAAAGGGTGCCCCAGAAAGTATAATATCTAGATGTACAACCATTCTGTGCAACGATGATGGTTCCATTGTGCCACTTACAGCTGATATTCGAGCAGAGCTGGACTCAAGGTTCAACAGTTTTGCAGGTAAAGAAACATTAAGATGCCTTGCTTTGGCCCTGAAATGGATGCCCTCAGTTCAACAGTCGTTGTCCTTTGATGATGAGAAAGATCTGACATTTATTGGGTTGGTTGGGATGCTGGATCCTCCAAGAGATGAAGTAAGAAATGCAATGATTTCGTGTATGACTGCTGGCATACGTGTTATAGTTGTCACTGGGGATAACAAGTCCACTGCTGAGTCACTTTGCCACAAGATCGGTGCTTTTGACCAATTGATAGATTTTGCTGAACATTCTTACACTGCTTCTGAGTTTGAAGAACTTCCAGCACTGCAACAAACTATAGCACTGCAACGTATAGCACTTTTTACCAGGGTTGAGCCTTCTCATAAAAGGATGCTAGTTGAAGCGTTACAGCACCAGAATGAAGTGGTTGCAATGACGGGTGACGGAGTTAATGATGCACCTGCACTGAAGAAGGCAGATATAGGAATTGCTATGGGTTCAGGAACAGCTGTTGCTAAGAGTGCTTCAGACATGGTGCTGGCTGATGACAACTTTGCCTCAATTGTTGCGgCTGTGGCAGAGGGAAGGGCTATATACAATAATACAAAACAGTTTATTCGATACATGATTTCTTCCAATATTGGCGAAGTAGTCTGTATATTTGTGGCTGCGGTGCTTGGAATACCGGATACCCTGGCCCCTGTCCAGTTGCTTTGGGTCAATTTGGTTACTGATGGATTGCCTGCCACTGCTATTGGCTTCAATAAACAAGACTCTGATGTGATGAGGGCTAAGCCTCGAAAGGTGAATGAAGCGGTTGTCACAGGTTGGCTCTTCTTTCGCTATTTGGTAATAGGAGCTTATGTTGGCCTTGCCACTGTTGCTGGTTTTATTTGGTGGTTTGTTTATTCTGATAGTGGCCCCAAACTTCCATACACAGAATTGATGAATTTTGACACTTGCCCAACCAGGGAGACAACTTATCCATGCAGTATATTTGATGATCGACATCCATCTACTATATCAATGACTGTGCTTGTCGTGGTCGAGATGTTCAATGCTTTGAACAATCTTAGTGAAAACCAATCTCTGctGGTCATCCCTCCCTGGAGTAACATGTGGCTTGTTGCTTCTATAATCCTAACTATGCTTCTTCACATACTAATCTTATATGTTCGCCCACTGTCAGTTCTTTTCTCTGTAACACCATTATCTTGGGCTGACTGGACAGTTGTCCTCTATCTTTCACTACCTGTTATAGTCATTGATGAGGTGTTAAAGTTCTTCTCCAGAAATCCCATTGATTATGGTTCAGGAGGTCTGATTTACTTCCAAAAAGAGAATTACGTGACAAGTTAA 2976 0.422 MEDAFARSIPEVLDFFGVDPTKGLSDAEVVQHARLYGKNGAPFWKLVLKQFDDLLVKILIAAALISFILALINGETGLMAFLEPSVILMILAANAAVGVITEKNAEKALEELRAYQADVATVLRNGCFSILPATELVPGDIVEVSVGCKIPADMRMIEMLSNQVRVDQAILTGESSSVEKELKTTTTTNAVYQDKTNILFSGTVMVAGRARAVVVGVGPNTAMGSIRDSMLRTEDEVTPLKKKLDEFGTFLAKVIAGICVLVWIVNIGHFRDPSHGGFLRGAIHYFKIAVALAVAAIPEGLPAVVTTCLALGTKRMARLNAIVRSLPSVETLGCTTVICSDKTGTLTTNMMSVAKICVVESAKRGPVVSEYSVSGTTYAPEGTIFDSTGMQLDFPAQLPCLLHMAMCSALCNESTLQYNPDKGSYEKIGESTEVALRVLAEKVGLPGFNSMPSALNMLTKHERASYCNHYWEEQFRKIYVLEFSRDRKMMSVLCSRNQMHVLFSKGAPESIISRCTTILCNDDGSIVPLTADIRAELDSRFNSFAGKETLRCLALALKWMPSVQQSLSFDDEKDLTFIGLVGMLDPPRDEVRNAMISCMTAGIRVIVVTGDNKSTAESLCHKIGAFDQLIDFAEHSYTASEFEELPALQQTIALQRIALFTRVEPSHKRMLVEALQHQNEVVAMTGDGVNDAPALKKADIGIAMGSGTAVAKSASDMVLADDNFASIVAAVAEGRAIYNNTKQFIRYMISSNIGEVVCIFVAAVLGIPDTLAPVQLLWVNLVTDGLPATAIGFNKQDSDVMRAKPRKVNEAVVTGWLFFRYLVIGAYVGLATVAGFIWWFVYSDSGPKLPYTELMNFDTCPTRETTYPCSIFDDRHPSTISMTVLVVVEMFNALNNLSENQSLLVIPPWSNMWLVASIILTMLLHILILYVRPLSVLFSVTPLSWADWTVVLYLSLPVIVIDEVLKFFSRNPIDYGSGGLIYFQKENYVTS 991
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3690 991 Gene3D - 22 231 - -
Ssu1g3690 991 PANTHER CALCIUM-TRANSPORTING ATPASE 4 974 - -
Ssu1g3690 991 Pfam Cation transport ATPase (P-type) 409 518 - -
Ssu1g3690 991 TIGRFAM ATPase-IIA1_Ca: calcium-translocating P-type ATPase, SERCA-type 47 840 IPR005782 GO:0005388|GO:0006816|GO:0016021
Ssu1g3690 991 SUPERFAMILY Calcium ATPase, transduction domain A 118 229 IPR008250 -
Ssu1g3690 991 Pfam Cation transporting ATPase, C-terminus 769 968 IPR006068 -
Ssu1g3690 991 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 229 364 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu1g3690 991 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 655 770 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu1g3690 991 SFLD p-type atpase 320 737 IPR044492 -
Ssu1g3690 991 Gene3D - 49 970 - -
Ssu1g3690 991 SFLD Haloacid Dehalogenase 320 737 - -
Ssu1g3690 991 CDD P-type_ATPase_SERCA 5 970 - -
Ssu1g3690 991 Pfam Cation transporter/ATPase, N-terminus 8 66 IPR004014 -
Ssu1g3690 991 SUPERFAMILY HAD-like 572 733 IPR036412 -
Ssu1g3690 991 Gene3D - 349 586 IPR023299 GO:0000166
Ssu1g3690 991 Coils Coil 105 125 - -
Ssu1g3690 991 PRINTS H+-transporting ATPase (proton pump) signature 716 741 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu1g3690 991 PRINTS H+-transporting ATPase (proton pump) signature 657 673 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu1g3690 991 PRINTS H+-transporting ATPase (proton pump) signature 685 701 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu1g3690 991 Pfam haloacid dehalogenase-like hydrolase 576 699 - -
Ssu1g3690 991 PANTHER SARCOPLASMIC/ENDOPLASMIC RETICULUM CALCIUM ATPASE 3 4 974 - -
Ssu1g3690 991 Pfam E1-E2 ATPase 116 318 - -
Ssu1g3690 991 ProSitePatterns E1-E2 ATPases phosphorylation site. 341 347 IPR018303 -
Ssu1g3690 991 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 346 583 IPR023299 GO:0000166
Ssu1g3690 991 PRINTS P-type cation-transporting ATPase superfamily signature 167 181 - -
Ssu1g3690 991 PRINTS P-type cation-transporting ATPase superfamily signature 339 353 - -
Ssu1g3690 991 PRINTS P-type cation-transporting ATPase superfamily signature 601 611 - -
Ssu1g3690 991 PRINTS P-type cation-transporting ATPase superfamily signature 579 590 - -
Ssu1g3690 991 PRINTS P-type cation-transporting ATPase superfamily signature 685 704 - -
Ssu1g3690 991 PRINTS P-type cation-transporting ATPase superfamily signature 708 720 - -
Ssu1g3690 991 SUPERFAMILY Calcium ATPase, transmembrane domain M 2 970 IPR023298 -
Ssu1g3690 991 SMART Cation_ATPase_N_a_2 3 71 IPR004014 -
Ssu1g3690 991 Gene3D - 336 729 IPR023214 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3690 Ssu-Chr1 93002495 93042538 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3690 1 971 Primary Pumps ATPases(2) AT1G10130 84.954 0.0 1712
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3690 K05853 - gmx:100783509 1834.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3690 1 93002495 93042538 Ssu1g3690 1 93002495 93042538 ECH