Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3689 ATGGATAGGTATAGAGAAGTGGTCTGGGACAAGAAACAAGCTCTTATGGCTAGGCCAAGTTCGCATTATGGTAATAATAGAGGCGTTATAGTTGTCCTTGCGTTCGCGTTACTGATTTCATCCAAGCTTGCAACATCTCACTCCATAGTACAGTTCCTTCCTGGGTTCCAGGGACCCCTTCCTTTTGTACTTGAAACTGGGTACGTTGAAGTGGGGGAAACTGAACCGGAGCAGCATGCAGAACTCTTCTACTATTTTATTGAGTCACAGAACAATCCAAAAGTGGACCCTCTCTTGCTTTGGCTAACAGGGGGTCCTGGTTGCTCTGCTTTCTCTGGCCTTGTCTTTGAAATAGGTCCACTGACATTTGAAAACGAGGAATACAATGGGAGCTTACCTAATTTGGCCTTGAAGCCTCAGTCATGGACAAAGGTAAGTAGCATTATATTTTTGGATCTGCCTGCCGGTACTGGCTTCTCTTATCCCAAAACAGAACGTGCTGCTCAGCAAAGTAGCTGGAAGCTAGTTCGCCATGCTCATCAATTTCTTAGGAAGTGGCTAATTGATCATCCGGAATTTCTCTCAAATGAAGTGTACATTGCTGGCGACTCATACTGCGGTCTTCCTGTCCCAGTCATTGTTCAAGAAATTTCATATGGAAACGAAGGTGGCGTCCAACCATGGATAAATCTCCAGGGATACCTGCTGGGAAATCCCTTAACAACATCAACTGAAGATAACTACAAAATACCATTTAATCATGGCATGGCACTAATTTCTGATGAACTCTACGAGTCACTGCAAAAGAATTGTAGAGGAGAGTATCACAACTTAGACCCAAGAAACGCATTTTGTGCAAGAGACATGCAAACATACGAGGAGTCTGTTTCAGGAATTAACACTGGCCATGTTTTGGAACCCGATTGCGAGCCGGAGTCCGGTCTGCGTAATCGAATGGAAGTCCCTTGGAGGAGGTCTCTTGCTCATAAAGCCTCAACTTTTTTCAGTACTCGTCTCACATTGCCACCCTTAAGCTGTCGGTCTCATGCATATTTCCTCTGTACCTGTTGGGCCAACGATGTTAATGTTCGCAAAGCACTGCATATTCGGAAGGTATTTATGAACTATAGGAAATGGACTCGTTGTAACAGTGACGTACACACACCTTTTAAGCACGATATCCCTAGCAGCTTCCAATATCATGTAAATCTCAGCAGAAAAGGCTATTATCGTTCATTAATATACAGTGGGGATCATGACATGATAGTTCCATTCTTGGCTACTCAAGCGTGGATAAGATCTTTAAACTATTCCATCGTGTCTGACTGGAGGCAATGGTATTCTTCCAATGGCCAAGTAGCAGGATACACGAGGACTTACTCAAATCGGATGACATTTGCAACTGTGAAGAAGCAACTCAGAACTGTTGCTAGAATTGTCCTTCGTCGAAGATTCCCTCTCCCTCGACCTCTTGCTACTTTTGATGTTCTAATTTGTCAATGTTGTGGATTTGGTGCATGCACCGTCCTTCTTGTATCAATGAGTGGAGAGGCAGTTCAGGACCAAGCTATGGTTGCAAAGCCTGTTCAATTGGGTCGACAAGTTGGAGTTGCAAAGATCGTTGAGAAAGAGAAATCAGttgaaaggagaaagaaaaggaaggatTGA 1668 0.4329 MDRYREVVWDKKQALMARPSSHYGNNRGVIVVLAFALLISSKLATSHSIVQFLPGFQGPLPFVLETGYVEVGETEPEQHAELFYYFIESQNNPKVDPLLLWLTGGPGCSAFSGLVFEIGPLTFENEEYNGSLPNLALKPQSWTKVSSIIFLDLPAGTGFSYPKTERAAQQSSWKLVRHAHQFLRKWLIDHPEFLSNEVYIAGDSYCGLPVPVIVQEISYGNEGGVQPWINLQGYLLGNPLTTSTEDNYKIPFNHGMALISDELYESLQKNCRGEYHNLDPRNAFCARDMQTYEESVSGINTGHVLEPDCEPESGLRNRMEVPWRRSLAHKASTFFSTRLTLPPLSCRSHAYFLCTCWANDVNVRKALHIRKVFMNYRKWTRCNSDVHTPFKHDIPSSFQYHVNLSRKGYYRSLIYSGDHDMIVPFLATQAWIRSLNYSIVSDWRQWYSSNGQVAGYTRTYSNRMTFATVKKQLRTVARIVLRRRFPLPRPLATFDVLICQCCGFGACTVLLVSMSGEAVQDQAMVAKPVQLGRQVGVAKIVEKEKSVERRKKRKD 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3689 555 PANTHER 1-O-ACYLGLUCOSE:ANTHOCYANIN ACYLTRANSFERASE 32 470 - -
Ssu1g3689 555 SUPERFAMILY alpha/beta-Hydrolases 50 470 IPR029058 -
Ssu1g3689 555 Gene3D - 346 473 - -
Ssu1g3689 555 Pfam Serine carboxypeptidase 54 471 IPR001563 GO:0004185|GO:0006508
Ssu1g3689 555 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 32 470 IPR001563 GO:0004185|GO:0006508
Ssu1g3689 555 Gene3D alpha/beta hydrolase 44 319 IPR029058 -
Ssu1g3689 555 PRINTS Carboxypeptidase C serine protease (S10) family signature 138 150 IPR001563 GO:0004185|GO:0006508
Ssu1g3689 555 PRINTS Carboxypeptidase C serine protease (S10) family signature 186 211 IPR001563 GO:0004185|GO:0006508
Ssu1g3689 555 PRINTS Carboxypeptidase C serine protease (S10) family signature 151 161 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3689 Ssu-Chr1 92990100 93000625 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3689 44 73 Calmodulin-binding Proteins AT2G22960 66.667 1.02e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3689 K16296 - gmx:100801015 672.93