Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3686 ATGCCTCCGTACCAGCCACCAGCCAAAGAAGGAACAGAAACCGCCGCGAAGGGTGACGTTTTCGATCTGAAGACGTTAATCGAAGAACTCGAGTCATCAATTGAAGTCCCTTGGGTCTTCATCTGCCCAATCTCGCTAGAGCCGATGCAAGACCCGGTGACCCTCTGCACGGGACAAACCTACGACCGTTCCAACATCCTCAAATGGTTCTCCCTCGGTCACAACACGTGTCCCACGACAATGCAAGAGCTCTGGGACGACTCCGTCACGCCGAACACCACTCTCCGCCGCTTCATCTTTTCCTGGTTCTCGCAGAAGCACTCGGCCCTCAAGAAGAAGCTGGACGACGTGCAAGGCGCGGCCTTGGAGCTCTTGGACGCGCTGAGAAGGGTGAAGGGCCAAAACAGAGTTCGAGCGCTTAAGCAACTTCGCCGGCTCGTCGATTCCCACGCGTCCACGAGGAAGACCGTCGAGGAAAACAACGGGCTTGCCTTGATCTCCTCGTTGTTGGGTCCTTTCACTTCCCACGCGGTTGGGTCCGAGGCTATTGGGATTCTCGTGAATTTGGAGTTGGGTTCGGAGCTGAAGAGGAATCTCATGCACCCCGCGAAGGTGTCGCTGCTAGTGGACATCATGAACGAGGGAACCATTCAGACGAAGATGAACTGCGCCAAGTTGATTCAGACGTTGTTGGTGGAAGGAAACGCCTCCGAGACGCAGGTTGTGTCGAGTTTGAGTCTCTTGGTCGGGTTGTTAAGGTTGGTGAGAGATAAGAAGCACCCAACTAGCGTTCTGACCGGACTCATATTACTTAAGACTGTGTGCTCGCGTGAATCGGTTAGAAGCTCCGTTGTGAGCATAGGAGCCGTGCCTCAATTGATTCGTCTTTTGCCCACTTTGAACAATGAATGCTTAGAGATAGCCCTTCATATTCTTGAAGTGCTGTCAACGCTTCCCGAGGGGAGGTTGGCTTTGAAAGAGTGTCCGAACATTATTCCCAATGTGGTGAAGTTGTTGATGAGAGTCTCCGAGAGTTGCACGCAATTCGCGTTGTCCATTTTGTGGGCTGTCTACAAGCTTGCCCCCGAAGAATGTGCTTCGAAAGCTGTGGAGGCGGGGTTGGCGGCGAAGCTACTTCTGGTGATTCAGAGTGGTTGCAACCCCGTGTTGAAGCAGAAGTCTGCCGAGTTTTTGAAAATGTGCAGTCTAGATTACTCTACTAGTATCTTGATTTCCAATTGTATGCTCACTGCAACGATACAATGA 1266 0.5221 MPPYQPPAKEGTETAAKGDVFDLKTLIEELESSIEVPWVFICPISLEPMQDPVTLCTGQTYDRSNILKWFSLGHNTCPTTMQELWDDSVTPNTTLRRFIFSWFSQKHSALKKKLDDVQGAALELLDALRRVKGQNRVRALKQLRRLVDSHASTRKTVEENNGLALISSLLGPFTSHAVGSEAIGILVNLELGSELKRNLMHPAKVSLLVDIMNEGTIQTKMNCAKLIQTLLVEGNASETQVVSSLSLLVGLLRLVRDKKHPTSVLTGLILLKTVCSRESVRSSVVSIGAVPQLIRLLPTLNNECLEIALHILEVLSTLPEGRLALKECPNIIPNVVKLLMRVSESCTQFALSILWAVYKLAPEECASKAVEAGLAAKLLLVIQSGCNPVLKQKSAEFLKMCSLDYSTSILISNCMLTATIQ 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3686 421 PANTHER WDSAM1 PROTEIN 15 420 IPR045185 GO:0061630
Ssu1g3686 421 Pfam U-box domain 36 107 IPR003613 GO:0004842|GO:0016567
Ssu1g3686 421 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 15 420 - -
Ssu1g3686 421 ProSiteProfiles U-box domain profile. 35 109 IPR003613 GO:0004842|GO:0016567
Ssu1g3686 421 Coils Coil 140 160 - -
Ssu1g3686 421 SUPERFAMILY RING/U-box 33 107 - -
Ssu1g3686 421 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 119 IPR013083 -
Ssu1g3686 421 SMART Ubox_2 39 102 IPR003613 GO:0004842|GO:0016567
Ssu1g3686 421 SUPERFAMILY ARM repeat 116 401 IPR016024 -
Ssu1g3686 421 Gene3D - 120 402 IPR011989 -
Ssu1g3686 421 CDD RING-Ubox_PUB 40 82 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3686 Ssu-Chr1 92933752 92935017 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3686 21 421 U-box Gene Family AT3G49810 61.596 3.60e-176 498
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3686 - - gmx:100808281 701.049
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3686 1 92933752 92935017 Ssu1g3686 1 92933752 92935017 ECH