Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3678 ATGGATTCCGATAGAGCGAAGCTGTTCGTAGGAGGCATTTCTCGCGACACCACGGAAGACGTTCTCAAACTCCACTTCGCCAAGTACGGCGTCGTTTTGGACTCCACAATCTCCGTAGACCGCAGCACCCGAAGCCCTAGAGGTTTCGGCTTCGTCACCTTCTCCGATCTCTCCGCAGCTGATAAAGCCCTTCACGACACGCACGTCATCCTCGGAAGAACGGTAGAAGTGAAAAAAGCAATTCCTAGAAgtgaacaacaacaacaccaaaACCAAATACAGAATAGAGGGGGAGGAGGTTTACCTGCTGGTATATCTGAGGAGGAGTTTAAGAAATACTTTGAGAGGTTTGGTCGAATAACCGACGTCGTGGTGATGCAGGACAGTGTGACTCACCGGCCCAGGGGATTTGGGTTCATCACCTTCGATTCCGAGGAATCGGTTCAGAACGTTATGGTGAAGAGTTTCCATGACTTGAATGGTAGACAGGTGGAGGTGAAGAGGGCTGTTCCCAAAGAGGGGAACCATGGCTATGATGGTTTTAGTAAACTACGAAATAAGAGTGAAAGAGGAGCTCCTAAAAGTTTTCCTCCTTATAGTCCTAGGAACATGCTCCCGGGTTTCACTCCTTTGCCTTGGTATAGTGGTGAGGGAGTGTATGCATACGGGTCTAACGCGTATGGTTGCTGGTACCCTGTGGGTGGGTATGGGGGGAATGGATATGCAGTTCCGTCTGATGCTTCTAGGAACTTCTGGTATGGGCCAATGATGACTGGTCCTCAGGCATGTCAGGTGCCTTATGCTAGTGCTGTTCCAAATGTTGCATATGTGGGCGATAGGATTGGAATAGTAGGTAGTGGTGCTGGCTCTTGGGGGTACAGTGGCATTCTTGGGTCGGCAACAAATTTGAAGTTTGATCAACCTTTTAATGCCAATGGATTTGTTCCAGGCAATGTGACATCCCCTCATGGTGTAAAGCTGGATGTTGTTGACTCTTCAAGTTTCAAAGGAAGCAATGGTGAAATTTCTAGTTGA 1035 0.4754 MDSDRAKLFVGGISRDTTEDVLKLHFAKYGVVLDSTISVDRSTRSPRGFGFVTFSDLSAADKALHDTHVILGRTVEVKKAIPRSEQQQHQNQIQNRGGGGLPAGISEEEFKKYFERFGRITDVVVMQDSVTHRPRGFGFITFDSEESVQNVMVKSFHDLNGRQVEVKRAVPKEGNHGYDGFSKLRNKSERGAPKSFPPYSPRNMLPGFTPLPWYSGEGVYAYGSNAYGCWYPVGGYGGNGYAVPSDASRNFWYGPMMTGPQACQVPYASAVPNVAYVGDRIGIVGSGAGSWGYSGILGSATNLKFDQPFNANGFVPGNVTSPHGVKLDVVDSSSFKGSNGEISS 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3678 344 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Ssu1g3678 344 SUPERFAMILY RNA-binding domain, RBD 3 99 IPR035979 GO:0003676
Ssu1g3678 344 Gene3D - 1 99 IPR012677 -
Ssu1g3678 344 Gene3D - 100 173 IPR012677 -
Ssu1g3678 344 SUPERFAMILY RNA-binding domain, RBD 99 179 IPR035979 GO:0003676
Ssu1g3678 344 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 1 342 - -
Ssu1g3678 344 SMART rrm1_1 7 78 IPR000504 GO:0003723
Ssu1g3678 344 SMART rrm1_1 99 167 IPR000504 GO:0003723
Ssu1g3678 344 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 99 162 IPR000504 GO:0003723
Ssu1g3678 344 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 74 IPR000504 GO:0003723
Ssu1g3678 344 MobiDBLite consensus disorder prediction 171 190 - -
Ssu1g3678 344 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 99 171 IPR000504 GO:0003723
Ssu1g3678 344 MobiDBLite consensus disorder prediction 171 198 - -
Ssu1g3678 344 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 342 - -
Ssu1g3678 344 MobiDBLite consensus disorder prediction 82 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3678 Ssu-Chr1 92765568 92766807 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3678 8 232 Eukaryotic Initiation Factors Gene Family AT2G36660 24.803 1.35e-13 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3678 K14411 - gmx:100816822 619.387
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3678 1 92765568 92766807 Ssu1g3678 1 92765568 92766807 ECH