Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3676 ATGGGGCTTCAACATGGAAACGAGGGCATTGTGAATTGTTCATTATCGGGTTTGAGGACAAGTGTTTCAGAAATGACCGTGTCTATGGCTATGCCTTCAGGCGTGGCTAATCCTTTTCTTGCTTCTTCTACTTGGGATCCTCTTGTTCCATTGAGTCAAACTTTTAGAGTCTCTCCAATGGTTTGTCATAGTGAGTTTGCCAATTCAGCTTACCCCTTTGTTTTGGAAAGCCAGGGAATGAACTGTGACTCTCACTTTGTTCAATATATATCTGACTCAAATTTTGCGGACATGTCCTCTAAGGTTCCCTCCTTTGGCCAAACCGGTTCTTATGATATAGCTAACACAGGGTATCAGCCAAATTATAATCCGAGTAATGAGTCTGGAATAGAAAGGAGTCCAATAACTAATGAGCAATCTCAGAACGAAGGTTCAACTCCTGAAGAAGGAGCAGCACCTAGTGGACATAAAAGAAAGCGAGGACTTGACTATAATTTTACTTTCAGTGCAAATAAGAATGCTGAGGCGGAAGCGATTAAGGATTCTCCTGGGGAGAGCTCTGATGATGTGAAGGAACAATGTGAAAATAAACCAAAGGTTGAACAAAATAGTAGTGAAAATTTAAGTGGAAAACAATTGCTGAAGCACAAGAAAGATGACTATGACAGTGGAGTAGCTCCAAAAGAAAATTTCACTCATGTGAGAGCCCGAAGAGGTCAAGCTACTAACAGTCACAGCCTTGCAGAAAGGGTAAGGAGAGAAAAGATTAGTGAGCGACTGAGGTTGCTTCAAGAACTTGTTCCAGGATGCAACAAGATAACGGGTAAAGCGGTAATGCTGGATGAGATTATAAACTACGTGCAATCACTGCAACAGCAGGTTGAGATTTTGTCCATGAAACTTGCCACTGTAAACCCagaattgaattttaatgtagAGCAAATCAGCTCCAAAGATTCGTGCATTGGGCATAGACCAATTGGTGGATATGGTTCTGGCATCAGCTGCACTCACCCATTCCCTTCTGGAAGTTTCCGGGGAGGCATTCCAAGCCCATCAACACAATTCCCTCCCATGCCACAGTCTGTTTTGAACCAAAGCTTCTATGGAATGGGCTACAAGTCTGGTACAGCTCTTGACAATTTGGGAAACAGTGGTAATACTAATAGGCAGAATCTTCTTTGTGATTTAACTCTCTTGCATAATCAATTCCAATTTctgtgtatattttttaatcattaa 1242 0.4082 MGLQHGNEGIVNCSLSGLRTSVSEMTVSMAMPSGVANPFLASSTWDPLVPLSQTFRVSPMVCHSEFANSAYPFVLESQGMNCDSHFVQYISDSNFADMSSKVPSFGQTGSYDIANTGYQPNYNPSNESGIERSPITNEQSQNEGSTPEEGAAPSGHKRKRGLDYNFTFSANKNAEAEAIKDSPGESSDDVKEQCENKPKVEQNSSENLSGKQLLKHKKDDYDSGVAPKENFTHVRARRGQATNSHSLAERVRREKISERLRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEILSMKLATVNPELNFNVEQISSKDSCIGHRPIGGYGSGISCTHPFPSGSFRGGIPSPSTQFPPMPQSVLNQSFYGMGYKSGTALDNLGNSGNTNRQNLLCDLTLLHNQFQFLCIFFNH 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3676 413 MobiDBLite consensus disorder prediction 211 226 - -
Ssu1g3676 413 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 7 389 - -
Ssu1g3676 413 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 7 389 IPR024097 GO:0006355
Ssu1g3676 413 SMART finulus 246 296 IPR011598 GO:0046983
Ssu1g3676 413 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 240 290 IPR011598 GO:0046983
Ssu1g3676 413 Pfam Helix-loop-helix DNA-binding domain 243 291 IPR011598 GO:0046983
Ssu1g3676 413 MobiDBLite consensus disorder prediction 178 199 - -
Ssu1g3676 413 MobiDBLite consensus disorder prediction 116 148 - -
Ssu1g3676 413 CDD bHLH_AtBPE_like 230 315 - -
Ssu1g3676 413 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 238 309 IPR036638 GO:0046983
Ssu1g3676 413 Gene3D - 237 314 IPR036638 GO:0046983
Ssu1g3676 413 MobiDBLite consensus disorder prediction 176 226 - -
Ssu1g3676 413 MobiDBLite consensus disorder prediction 116 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3676 Ssu-Chr1 92693835 92696150 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3676 1 375 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G10120 40.519 4.29e-65 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu1g3676 HLH 1.9e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3676 - - gmx:100787749 548.125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3676 1 92693835 92696150 Ssu1g3676 1 92693835 92696150 ECH