Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3666 ATGGGCTTTGACATCTCTATCCCAGGGCCTCGACTTGGTCTTGGTCTTGGCCTCCACGATCACTCATCAGAAAATTGCATGAAAAGCGATTATGAACTCAGGCAAAGACAAAGCCAGAAGAAAAAGGAAGCGGATCCATGCAATAAGGCTTACCCATCACTTACGTTGGCGCCACCGGATGATGaggcaaataataatattcaacaAATTACAAAGACTGAATCtgatgaatattattatttccatcCACATGCCTCTTCTCCAAGTGCAcatcaagagagagagagatcagtTCGAGGCGAAGAACTTGAGTTAGAGGTAGAGAAGATTCCGTCAAGGGTGGTCGATGTTGATGAAAATGGTTACCCCAAGAAGAAACTTAGGCTCACCAAAGAACAATCTGCAGTCTTGGAAGATAGCTTCAAAGAGCATGCTACTCTCAGTCCGAAACAAAAGCAAGAATTGTCAAAGAAACTGAATCTGCGGGCGAGACAAGTGGAGGTGTGGTTTCAGAACAGAAGAGCCAGGACAAAACTGAAACAAACCGAAGTGGACTGTGAGTTACTGAAAAAGTGCTGTGAAACTCTAACTGAGGAGAACAAGATGCTGCAAAAAGAGTTGCAAGAGCTTAAATCGATGAAAACAACGCTGGGACCCTTTTATATGCAGCTACCAGTGGCAAGCCTTACAATATGCCCTTCTTGTGAGAGAATTTGTGGTGGCAGCGGCGCGAGCAACAATGGCTCCTCTCCCGCGACGGCTTTGCTTGTTGGCCCAAAAGCCCATCAGCACttctataaaaataactatacatTCACCCAACCATCCGCAGCTTGCTAG 840 0.4214 MGFDISIPGPRLGLGLGLHDHSSENCMKSDYELRQRQSQKKKEADPCNKAYPSLTLAPPDDEANNNIQQITKTESDEYYYFHPHASSPSAHQERERSVRGEELELEVEKIPSRVVDVDENGYPKKKLRLTKEQSAVLEDSFKEHATLSPKQKQELSKKLNLRARQVEVWFQNRRARTKLKQTEVDCELLKKCCETLTEENKMLQKELQELKSMKTTLGPFYMQLPVASLTICPSCERICGGSGASNNGSSPATALLVGPKAHQHFYKNNYTFTQPSAAC 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3666 279 Pfam Homeodomain 124 178 IPR001356 GO:0003677
Ssu1g3666 279 CDD homeodomain 123 181 IPR001356 GO:0003677
Ssu1g3666 279 SMART halz 180 224 IPR003106 GO:0006355|GO:0043565
Ssu1g3666 279 SUPERFAMILY Homeodomain-like 119 181 IPR009057 -
Ssu1g3666 279 Coils Coil 186 213 - -
Ssu1g3666 279 PANTHER - 6 278 - -
Ssu1g3666 279 ProSitePatterns 'Homeobox' domain signature. 155 178 IPR017970 GO:0000981|GO:0006355
Ssu1g3666 279 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 6 278 - -
Ssu1g3666 279 MobiDBLite consensus disorder prediction 32 47 - -
Ssu1g3666 279 MobiDBLite consensus disorder prediction 32 64 - -
Ssu1g3666 279 ProSiteProfiles 'Homeobox' domain profile. 120 180 IPR001356 GO:0003677
Ssu1g3666 279 Pfam Homeobox associated leucine zipper 180 214 IPR003106 GO:0006355|GO:0043565
Ssu1g3666 279 SMART HOX_1 123 184 IPR001356 GO:0003677
Ssu1g3666 279 Gene3D - 118 185 - -
Ssu1g3666 279 MobiDBLite consensus disorder prediction 82 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3666 Ssu-Chr1 92404490 92406156 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3666 93 279 Homeobox Transcription Factor Family AT4G37790 54.229 5.34e-61 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Ssu1g3666 Homeodomain 3.3e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3666 K09338 - gmx:100790927 400.979
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3666 1 92404490 92406156 Ssu1g3666 1 92404490 92406156 ECH