Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3665 ATGGAGGAATACACCAATAATCACATGAGCGAAAACACAACTCCAACTCCAAGGGCAAATTTGTTGTACTCGTTGGCTGGTGTTTCAAGCGTAGGAAACCGTCACCATCAGCTTCCCATTAACACCTCTAATCTTCAATCCGGTGGATCTGATCACTGTTTCCAACCCCATCAAGTACAACACCCTTCAGTGAAAACCGAGTCCAACAACTCCCACCTTCACTCTCCTATCTTCCACCATCCTCTAATGAGACCAAATCTTCATCACACGCTGTATCCTCAGCAAGGAGGGAGCCAGAGCTCTAACGAACTTGAAGCCATAAAAGCCAAAATCATTGCCCATCCTCACTACTTCAATCTTTTAGAAGTTTACATGGATTGCCAAAAGGTAGGAGCTCCGCCAGAAGTGGTGGCGCGTTTGGCTGCGGTTCGACAGGATTTTGAGGCACGGCAGCGATCTTTGGTTAGGTCCAGGGAAATTTGCAAGGACCCTGAACTTGATCAATTCATGGAAGCGTACTATGACATGCTTGTGAAGTATCGAGAAGAATTAACGAGGCCCATAAAAGAGGCCATGGATTTCATGCGGAGGATAGAAACCCAGCTGAACACGCTTTGCAATGGAACCGTGCGGATCTTCTCTgCTTTTCGTGGAGCCATTGGGGGTTGTTGTATAATATTCTTTAGCATACATACCCATCATTGCAGAGATGATACGTGTGAAAACATTGGTTCATCGGAAGAGGATCAAGACAACAGTGGTGGAGAAACAGAATTTGCCGAGATTGATCCCCGGGCAGAAGACCGTGAACTCAAAAGCAACTTGCTCAGGAAGTACAGTGGTTACTTAAGTAGCCTTAAGCAAGAactttcaaagaaaaagaaaaaaggaaaactgcCTAAAGAAGCTAGGCAAAAGCTACTTAACTGGTGGGAATTACATTACAAGTGGCCATATCCTTCGGAATCAGAGAAGATGGCGCTGGCTGAAGCAACTGGTTTGGACCAGAAGCAAATAAATAACTGGTTCATAAATCAAAGGAAGCGGCACTGGAAACCATCGGAAGACATGCAATTTATTGTTATGGATGGCCTGCATACGCAGAACGCAACTCTCTATATGGACAGCCACTACATGCCTGATGGCCATTACCGTTTAGGGCCATAA 1167 0.4439 MEEYTNNHMSENTTPTPRANLLYSLAGVSSVGNRHHQLPINTSNLQSGGSDHCFQPHQVQHPSVKTESNNSHLHSPIFHHPLMRPNLHHTLYPQQGGSQSSNELEAIKAKIIAHPHYFNLLEVYMDCQKVGAPPEVVARLAAVRQDFEARQRSLVRSREICKDPELDQFMEAYYDMLVKYREELTRPIKEAMDFMRRIETQLNTLCNGTVRIFSAFRGAIGGCCIIFFSIHTHHCRDDTCENIGSSEEDQDNSGGETEFAEIDPRAEDRELKSNLLRKYSGYLSSLKQELSKKKKKGKLPKEARQKLLNWWELHYKWPYPSESEKMALAEATGLDQKQINNWFINQRKRHWKPSEDMQFIVMDGLHTQNATLYMDSHYMPDGHYRLGP 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3665 388 Pfam KNOX2 domain 160 206 IPR005541 GO:0003677|GO:0005634
Ssu1g3665 388 MobiDBLite consensus disorder prediction 244 264 - -
Ssu1g3665 388 ProSiteProfiles ELK domain profile. 270 290 IPR005539 GO:0003677
Ssu1g3665 388 SMART KNOX2_2 156 207 IPR005541 GO:0003677|GO:0005634
Ssu1g3665 388 SMART HOX_1 292 357 IPR001356 GO:0003677
Ssu1g3665 388 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 27 380 - -
Ssu1g3665 388 SMART ELK_2 270 291 IPR005539 GO:0003677
Ssu1g3665 388 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 1 27 380 - -
Ssu1g3665 388 Pfam ELK domain 270 291 IPR005539 GO:0003677
Ssu1g3665 388 SUPERFAMILY Homeodomain-like 291 364 IPR009057 -
Ssu1g3665 388 ProSiteProfiles 'Homeobox' domain profile. 290 353 IPR001356 GO:0003677
Ssu1g3665 388 SMART KNOX1_2 105 149 IPR005540 GO:0003677|GO:0005634
Ssu1g3665 388 Pfam Homeobox KN domain 310 349 IPR008422 GO:0003677|GO:0006355
Ssu1g3665 388 Gene3D - 287 359 - -
Ssu1g3665 388 ProSitePatterns 'Homeobox' domain signature. 328 351 IPR017970 GO:0000981|GO:0006355
Ssu1g3665 388 CDD homeodomain 302 354 IPR001356 GO:0003677
Ssu1g3665 388 Pfam KNOX1 domain 106 147 IPR005540 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3665 Ssu-Chr1 92381714 92387019 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3665 43 388 Homeobox Transcription Factor Family AT4G08150 61.864 7.84e-140 402
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Ssu1g3665 KNOX2 2.3e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3665 - - aprc:113866252 607.446
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3665 1 92381714 92387019 Ssu1g3665 1 92381714 92387019 ECH