Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3663 ATGATCCCAAACCTTCAAATCCCCCACTTTGAGGCCGACGGAGGAGCACTCTCCCCATTCTCCTCCAACGACTCACCCTCCTTCTCCACCGACCATTTCCGAATGTTCCAGTTCAAGGTGCGGAACTGTCCACGTGGCAGGTCCCACGACTGGACGGAGTGTCCGTACGCCCACCCCGCCGAGAAGGCTCGCCGCCGGGACCCCCGAAAGTACCACTACTCCGGCACGGCGTGCCCCGATTACCGGAAGGGGAACTGCAGGCTGGGCGACACGTGTCGGTTCGCGCACGGCGTCTTCGAGTGCTGGCTCCACCCCTCGCGCTACCGGACCCAGCTCTGCAAGGACGGAACCAGTTGCCGTCGCAGAGTGTGCTTCTTCGCTCACACCAGCGACCAGCTCCGCGTCGTGAACGCGGCCGAATCGCCCCTCGTTTCCTCCCCAACTTCGGTCGTCAACTCTTCGTTCTTCGACTCGCCGCCCTCTTCGCCGTACGGCGCCGTGCCGGCGAGCGTGCGCGAAATAGTTAACTCAATGCGGAACGTTCGGCTCGAGGAAACGCGCTGCGTGTTCGGGTCGCCACGTGGCGGGTTTTGGAGTGTGGGTGGGTGCGAGGAGGAGCCCGCGATGGAGAGGGTGGAGTCCGGGAGGGACATTAGAGCGAGAATCTACGCGAGGCTTAGTAGGGATAACTCGATTCCAGCCTCCGCGCCTGACATTGGATGGGTCTCGGAACTCGTGAAGTGA 744 0.6277 MIPNLQIPHFEADGGALSPFSSNDSPSFSTDHFRMFQFKVRNCPRGRSHDWTECPYAHPAEKARRRDPRKYHYSGTACPDYRKGNCRLGDTCRFAHGVFECWLHPSRYRTQLCKDGTSCRRRVCFFAHTSDQLRVVNAAESPLVSSPTSVVNSSFFDSPPSSPYGAVPASVREIVNSMRNVRLEETRCVFGSPRGGFWSVGGCEEEPAMERVESGRDIRARIYARLSRDNSIPASAPDIGWVSELVK 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3663 247 PANTHER UNKEMPT FAMILY MEMBER 202 247 IPR045234 -
Ssu1g3663 247 PANTHER UNKEMPT FAMILY MEMBER 24 188 IPR045234 -
Ssu1g3663 247 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 77 97 IPR000571 GO:0046872
Ssu1g3663 247 SUPERFAMILY CCCH zinc finger 71 101 IPR036855 GO:0046872
Ssu1g3663 247 SMART c3hfinal6 72 98 IPR000571 GO:0046872
Ssu1g3663 247 SMART c3hfinal6 107 130 IPR000571 GO:0046872
Ssu1g3663 247 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 202 247 - -
Ssu1g3663 247 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 24 188 - -
Ssu1g3663 247 Gene3D - 73 136 - -
Ssu1g3663 247 ProSiteProfiles Zinc finger C3H1-type profile. 73 99 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3663 Ssu-Chr1 92306244 92306987 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3663 28 157 C2H2 Transcription Factor Family AT5G12850 59.848 6.94e-55 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Ssu1g3663 zf-CCCH 9.4e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3663 - K23048 gmx:100786368 379.022
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3663 1 92306244 92306987 Ssu1g3663 1 92306244 92306987 ECH