Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3652 ATGAATTTTCTAGAATGGAAAGAAGCTATTCTTGGTGCTTTCAGGGTGATGGACAAGGAGGTGAATCTGCAAGAGAATCTGGACTGCTCTTGCAGTGGAACCACGGCTGTAGTTGTCATAAGACAGGGTGAAGATCTTGTCATAGCTAACCTTGGTgactcaagagcaatcttggGGACAATCTCTGACGGTGAAATCATACCTACTCAATTGACCACGGATATGAAACCTGGATTGCCTTGCGAAGCAGATCGAATAAGAAGTTGCAATGGTCGTGTATTTGCACTAAAGGAAGAACCACACATACAGCGAGTGTGGTTACCCAATGAGAACTCCCCCGGCCTAGCCATGTCTCGAGCTTTTGGAGATTTCATGCTCAAAGACCACGGTATCATTGCCATCCCGGATATTTCGTACCGCAATCTAACATCTAGCGATCAATTTATTGTACTTGCAAGTGATGGGGTGTGGGATGTACTAAGCAACAAGGAGGTTTCCTCAATTGTGTGGAGGGCAGACAGTGAAAAAGCAGCAGCAAGGGCAGTAGTGGAAGCAGCAACCACAGCATGGAAACGCAAGTATCCTTCTTCTGAGGTAGATGACTGCACTGTGGTTTGCCTCTTCCTCCAGAAGGAACAACAGCTCGTGCCGGTGAAAAGTGGAAATCCCTGA 672 0.4539 MNFLEWKEAILGAFRVMDKEVNLQENLDCSCSGTTAVVVIRQGEDLVIANLGDSRAILGTISDGEIIPTQLTTDMKPGLPCEADRIRSCNGRVFALKEEPHIQRVWLPNENSPGLAMSRAFGDFMLKDHGIIAIPDISYRNLTSSDQFIVLASDGVWDVLSNKEVSSIVWRADSEKAAARAVVEAATTAWKRKYPSSEVDDCTVVCLFLQKEQQLVPVKSGNP 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3652 223 Gene3D - 3 216 IPR036457 -
Ssu1g3652 223 ProSiteProfiles PPM-type phosphatase domain profile. 1 209 IPR001932 -
Ssu1g3652 223 PANTHER PROTEIN PHOSPHATASE 2C 72-RELATED 3 214 - -
Ssu1g3652 223 Pfam Protein phosphatase 2C 8 184 IPR001932 -
Ssu1g3652 223 SUPERFAMILY PP2C-like 4 210 IPR036457 -
Ssu1g3652 223 CDD PP2Cc 5 209 IPR001932 -
Ssu1g3652 223 PANTHER ALPHABET, ISOFORM E-RELATED 3 214 - -
Ssu1g3652 223 SMART PP2C_4 1 207 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3652 Ssu-Chr1 92138327 92139344 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3652 3 210 PP2C-type Phosphatase Gene Family AT1G79630 59.809 2.41e-88 267
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3652 - - gmx:100795893 378.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3652 1 92138327 92139344 Ssu1g3652 1 92138327 92139344 ECH
Ssu5g0384 5 8175951 8178223 Ssu1g3652 1 92138327 92139344 PCT