Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3641 ATGGAGACTGATATGTACATTGCTCCACTGGACATTTCTGGACGAGATGCTACAGTAATGGATGAAATTTCCCAACATTCCACCTCAAATCCTCTCATTCAGTGCTATTCACTTGACCTTAACAACCAATCCCATATCATAAATGGAATTTCAATGCTTTCTGGAGAGCAAGGTGAACCTATAAGCGATGTTCATGCTGATGCTTGCTTCATTAATCCTTCAATTATTGCTGACTCTAGTCAATTAGCCACATCACTAGGAAAGACTATTGTGGGAGATTCCTCAAATCCCATGGAGAACACTGAGCTTCAAGAGCATTTAGTTGGAGGAATGCCAATTACTCCCTCTTCCCTTGCTGCCATTCTTGCTGCTAGAATTGGTCTTGAAGAAAATTTGGAGAACTCATCAGCCTTGCCTCCCTCACTCTGCTCAATGGGGGCACTGGGGCCATTCTTCAACAATTTGCAAGGTACTTCGAACCCTTTCTCTGCAACATTTGAGGACTGTGGTTACAATGAAGGTCGTGGTAAGTGGAATGCTAACAAGTTTCCTAAAGCTCCAGGGATTGATGGAACTTGTCAGCCTTATTCTTCTATAGCAAACCTGGATCCAGATGAATGGGCACCATCAAATGTTGCAAACATGGCCAATCATGCTTACCATTCCTCTAACTTTAGTAAGGAACTTTCTCTAAGTCTTGCAACATCTACAACCACAGGACAGTGCTCAGAGTTGAGTTGCTCTAATGTGACCCCATGCATGAATGGAGCCATGTCAGGGTTGGAGCAAGCCTCGTGCAGCAGCAGTAGGGAACTTTCTATGAATTTGGGTGGTAATAAATATGTTCCGTTTTCACCAGAAGTACTGGAATCGAGATATCTTGTTGGGATTCAAGAGATACTTGCTCAAATTGCAAGATATTCATTTGAAAATCTAGAACAGTTAAATTATTCAGCTGCTGGTAATAGGGCTGGTGGAAACGAGCCAGCTTCAGCTTTCCCACCCAATAGAAGGATTTTGATAGATCACAATGCAGATTCTATGCATGAAACTCATGCAGAGTCTCCATTGCAAAGGCATGCTGCTGAATCAAAGAAAGCCCAACTGCTGACACTCCTCCAACTGGTGGATAACCGATATAGCCAGTGTTTGGATGAGATACACACGGTTGTATCTGCATTCCACGCCGCTACAGAGCTGGACCCACAAGTACATGCACATTTTGCTCTTCAAACTATCTCTATCCTTTACAAGGACTTACGAGAGAGGATTGGCTATTACATTCTTGACATGGGATCAAATTTCAACAACTCGTGCTCAGAAGAGAATGAATGGTCTGTTGAAACTTCATTCCTTCAAAAGCAGTGGGCTCTCCAGcagttgaaaagaaaagatcATCAGTTATGGAGGCCCCAAAGAGGTTTGCCAGAAAGATCCGTCTCAGTTCTACGgacttggatgtttcagaatttCCTGCATCCGTATCCTAAAGATGCAGAGAAGCATTTACTTGCAGTAAAAAGTGGGTTGACGAGAAGCCAGGTATCCAATTGGTTTATAAATGCTCGTGTTCGGCTGTGGAAACCAATGATTGAAGAGATGTATGCtgaaatgaataaaagaaaggCTTGTCGAAATGAAGAAGGAATGCAGAGCAACCACGGAAACAGGATAAGCATGAGTAATCAAAGGTTTAATGTTAACTAA 1707 0.4148 METDMYIAPLDISGRDATVMDEISQHSTSNPLIQCYSLDLNNQSHIINGISMLSGEQGEPISDVHADACFINPSIIADSSQLATSLGKTIVGDSSNPMENTELQEHLVGGMPITPSSLAAILAARIGLEENLENSSALPPSLCSMGALGPFFNNLQGTSNPFSATFEDCGYNEGRGKWNANKFPKAPGIDGTCQPYSSIANLDPDEWAPSNVANMANHAYHSSNFSKELSLSLATSTTTGQCSELSCSNVTPCMNGAMSGLEQASCSSSRELSMNLGGNKYVPFSPEVLESRYLVGIQEILAQIARYSFENLEQLNYSAAGNRAGGNEPASAFPPNRRILIDHNADSMHETHAESPLQRHAAESKKAQLLTLLQLVDNRYSQCLDEIHTVVSAFHAATELDPQVHAHFALQTISILYKDLRERIGYYILDMGSNFNNSCSEENEWSVETSFLQKQWALQQLKRKDHQLWRPQRGLPERSVSVLRTWMFQNFLHPYPKDAEKHLLAVKSGLTRSQVSNWFINARVRLWKPMIEEMYAEMNKRKACRNEEGMQSNHGNRISMSNQRFNVN 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3641 568 SMART prehox3 282 426 IPR006563 -
Ssu1g3641 568 PANTHER HOMEOBOX PROTEIN ATH1 10 565 - -
Ssu1g3641 568 SUPERFAMILY Homeodomain-like 471 538 IPR009057 -
Ssu1g3641 568 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 10 565 - -
Ssu1g3641 568 SMART HOX_1 469 533 IPR001356 GO:0003677
Ssu1g3641 568 MobiDBLite consensus disorder prediction 548 568 - -
Ssu1g3641 568 CDD homeodomain 469 530 IPR001356 GO:0003677
Ssu1g3641 568 ProSiteProfiles 'Homeobox' domain profile. 466 529 IPR001356 GO:0003677
Ssu1g3641 568 Pfam Homeobox KN domain 486 525 IPR008422 GO:0003677|GO:0006355
Ssu1g3641 568 MobiDBLite consensus disorder prediction 549 568 - -
Ssu1g3641 568 Gene3D - 472 551 - -
Ssu1g3641 568 Pfam Associated with HOX 288 424 IPR006563 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3641 Ssu-Chr1 92030537 92032704 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3641 182 542 Homeobox Transcription Factor Family AT4G32980 52.198 2.62e-107 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Ssu1g3641 POX 2.9e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3641 - - gmx:100820354 977.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3641 1 92030537 92032704 Ssu1g3641 1 92030537 92032704 ECH
Ssu5g0389 5 8247334 8250425 Ssu1g3641 1 92030537 92032704 PCT