Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3639 ATGGGAAGAATAGTTAGGAAATGTTCATATTGTGGTAACTTGGGTCACAATGCGAGGACTTGTAAAAATTTCAGTCACGGACAGCTAAAGCTCTTCGGAGTGAAACTTGACGTTTATTCTCCTTCATCATCCTCGAATTCTTTTTCATCATCACCTTCATATTCTGCCATGAAAAGAAGTTTCAGCACGGACCACTTGTTGTGTTCATGGGCTTCTTCATCTGTACCTTCCTCCTCTTCCTCGCCTTCTCTGCTTGGTCTAAATGAAAATTCAGATAGTTACTTAGTCAATGCCAATAGCCTCATATCAACAATCCGAGACACCAAAAAAGGTGTGCCGTGGACAGAGGAGGAGCACCGGATATTTCTTATAGGACTTGAGAAGCTGGGGAAGGGGAACTGGAGAGGCATATCTAAAAGTTTTGTGACAACAAGAACGCCTACCCAAGTGGCCAGTCAtgcacaaaaatattttctccgTCAGTCTCAGAATAGCTTCAATGGAAGAAAACACCGTCCCAGCCTGTTCGATGTGGGAATTAATGAAAGTAAAACCACATTTAATTCTTGCTCTTCTAAACCAAGTGAAGCTTTTGGTCCATTTGGGTTCCCTTCAGGGATGACTAATTTAACTTCGAATGATATCAATTGCTTCAGTCAATTAAGTAGCAATCGAAATTTCTTTCACAGTGGCTTTCGCATCCTCATACAGTGCTGA 717 0.4059 MGRIVRKCSYCGNLGHNARTCKNFSHGQLKLFGVKLDVYSPSSSSNSFSSSPSYSAMKRSFSTDHLLCSWASSSVPSSSSSPSLLGLNENSDSYLVNANSLISTIRDTKKGVPWTEEEHRIFLIGLEKLGKGNWRGISKSFVTTRTPTQVASHAQKYFLRQSQNSFNGRKHRPSLFDVGINESKTTFNSCSSKPSEAFGPFGFPSGMTNLTSNDINCFSQLSSNRNFFHSGFRILIQC 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3639 238 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 109 161 IPR006447 GO:0003677
Ssu1g3639 238 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 5 195 - -
Ssu1g3639 238 SMART sant 110 160 IPR001005 -
Ssu1g3639 238 Pfam Myb-like DNA-binding domain 113 158 IPR001005 -
Ssu1g3639 238 PANTHER TRANSCRIPTION FACTOR KUA1 5 195 - -
Ssu1g3639 238 ProSiteProfiles Myb-like domain profile. 106 158 IPR001005 -
Ssu1g3639 238 CDD SANT 113 158 IPR001005 -
Ssu1g3639 238 Gene3D - 114 163 - -
Ssu1g3639 238 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 106 162 IPR017930 -
Ssu1g3639 238 SUPERFAMILY Homeodomain-like 108 162 IPR009057 -
Ssu1g3639 238 ProSiteProfiles Zinc finger CCHC-type profile. 6 23 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3639 Ssu-Chr1 91987136 91989700 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Ssu1g3639 Myb_DNA-binding 4.5e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3639 - - aprc:113866246 286.189
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3639 1 91987136 91989700 Ssu1g3639 1 91987136 91989700 ECH