Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3635 ATGGCAGATCTAAGCAGCGCGTGTGGCCACCATAATTTATCCTTCTACACAATAGAGGAGGAGGAGAACAAAAGAGGTTATGAGTATGAAAAATGGATGTCTTCAAATGTGAGATTAGCGAGAAAAATGATGAACCCACCTAGCAGTGATCTAGCCAGAAACAAAGCATTCAATATTGCTAGGGTTTGTTCGGATTGTAACACAACCAGTACCCCACTCTGGAGGAGTGGTCCTAATGGTCCCAAGTCACTTTGCAATGCATGCGGCATTCGACAGAGGAAGGCAAGAAGGGCAATGGCAGAAGCTGCGAATGATTTTGCCCCTTCCATTGATGCATCTTCTACGAAGACCAGAGTGCATCACAAGGAAAAGAAGTCTCGTACAACTAGTACCACCACTGCTGCTTCAGGAACATCTCAGCAGGAGAAAGTGAAGATTGATTTCAAGGATTTTGCTATAAGTTTGAGGGACAATTCGGCTTTCCAGCAAATGTTTCCAATGGATGAAGTAGTTGAGGCGGCGCTGCTTCTCATGGATTTATCTTGTGGCTTTGTTTACTTTTAA 564 0.4397 MADLSSACGHHNLSFYTIEEEENKRGYEYEKWMSSNVRLARKMMNPPSSDLARNKAFNIARVCSDCNTTSTPLWRSGPNGPKSLCNACGIRQRKARRAMAEAANDFAPSIDASSTKTRVHHKEKKSRTTSTTTAASGTSQQEKVKIDFKDFAISLRDNSAFQQMFPMDEVVEAALLLMDLSCGFVYF 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3635 187 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 57 98 - -
Ssu1g3635 187 ProSiteProfiles GATA-type zinc finger domain profile. 57 93 IPR000679 GO:0006355|GO:0043565
Ssu1g3635 187 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 20 185 - -
Ssu1g3635 187 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 20 185 - -
Ssu1g3635 187 SMART GATA_3 57 108 IPR000679 GO:0006355|GO:0043565
Ssu1g3635 187 CDD ZnF_GATA 62 116 IPR000679 GO:0006355|GO:0043565
Ssu1g3635 187 MobiDBLite consensus disorder prediction 111 139 - -
Ssu1g3635 187 ProSitePatterns GATA-type zinc finger domain. 63 88 IPR000679 GO:0006355|GO:0043565
Ssu1g3635 187 Pfam GATA zinc finger 63 96 IPR000679 GO:0006355|GO:0043565
Ssu1g3635 187 Gene3D - 59 145 IPR013088 GO:0006355|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3635 Ssu-Chr1 91964812 91965521 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3635 26 186 C2C2-Gata Transcription Factor Family AT4G26150 36.364 1.41e-26 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Ssu1g3635 GATA 2.1e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3635 - - gmx:102659929 254.603
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0403 5 8470291 8472482 Ssu1g3635 1 91964812 91965521 PCT