Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3629 ATGAGGGCAGAGGACGATGACCCAGAAAGGAAAAGATTGAAACTAAGGCAAGAAAAAGCGCTGAACTGTCGGATGAAGAACTTTCAGCGCGATTTGATGGCTGGGGCGGCGATGGGTGGGGTGGTGCACACGATTGTGGCCCCAGTTGAGAGGGCAAAGCTATTGTTGCAGACCCAGGAGAGCAATTTGGCCATTGTGGCGAGTGGGCGTCGCAGATTCAAGGGCATGTTGGATTGCATAGTCCGTACTGTCAGGGAAGAAGGCATTCTCTCTCTGTGGCGAGGCAATGGCAGCAGCGTTCTTCGTTACTATCCTTCTGTCGCACTCAATTTCTCTCTCAAGGATCTTTACAGAAGCATGTTAAGAGGTGGAAACTCTGGTGATAATAATCTTATGTCAGGTGCCCCTGCTAATTTCGTCGCGGGGGCTGCAGCCGGCTGTACAACGCTTGTGTTGGTATACCCCCTTGATATAGCACACACACGCCTTGCTGCTGACATTGGAAGGACAGAAGTGCGCCAATTTCGAGGCATTTACCATTTCTTGGCTACCATATTCCATAAGGATGGCGTTCCGGGGATCTACAGGGGCCTTCCTGCATCTCTACATGGGATGGTGGTACACAGGGGCCTATATTTTggaggctttgataccatgaaAGAGATCTTGTCTGAAGAATCAAAACTTGAGTTGGCGTTGTGGAAGCGTTGGGTGGTAGCTCAGGCAGTCACAACCTCTGCCGGATTGATATCTTATCCACTAGACACCGTTCGTAGGAGGATGATGATGCAGTCTGGCATGGAACAGCCAGTGTACAATAGCACCCTGGATTGCTGGAGGAAGATTTATAGGACAGAGGGGTTGGCTTCATTTTACCGTGGTGCAGTTTCTAATGTGTTCAGGAGCACAGGAGCAGCAGCTATCTTAGTCTTGTATGATGAGGTTAAGAAATTTATGAACTGGGGGAGATTTTAA 975 0.4831 MRAEDDDPERKRLKLRQEKALNCRMKNFQRDLMAGAAMGGVVHTIVAPVERAKLLLQTQESNLAIVASGRRRFKGMLDCIVRTVREEGILSLWRGNGSSVLRYYPSVALNFSLKDLYRSMLRGGNSGDNNLMSGAPANFVAGAAAGCTTLVLVYPLDIAHTRLAADIGRTEVRQFRGIYHFLATIFHKDGVPGIYRGLPASLHGMVVHRGLYFGGFDTMKEILSEESKLELALWKRWVVAQAVTTSAGLISYPLDTVRRRMMMQSGMEQPVYNSTLDCWRKIYRTEGLASFYRGAVSNVFRSTGAAAILVLYDEVKKFMNWGRF 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3629 324 ProSiteProfiles Solute carrier (Solcar) repeat profile. 26 120 IPR018108 -
Ssu1g3629 324 Gene3D Mitochondrial carrier domain 30 322 IPR023395 -
Ssu1g3629 324 PANTHER ADP,ATP CARRIER PROTEIN 1-RELATED-RELATED 24 323 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Ssu1g3629 324 Pfam Mitochondrial carrier protein 233 320 IPR018108 -
Ssu1g3629 324 Pfam Mitochondrial carrier protein 135 225 IPR018108 -
Ssu1g3629 324 Pfam Mitochondrial carrier protein 27 122 IPR018108 -
Ssu1g3629 324 PRINTS Mitochondrial carrier protein signature 95 115 IPR002067 GO:0055085
Ssu1g3629 324 PRINTS Mitochondrial carrier protein signature 195 213 IPR002067 GO:0055085
Ssu1g3629 324 PRINTS Mitochondrial carrier protein signature 240 262 IPR002067 GO:0055085
Ssu1g3629 324 PRINTS Mitochondrial carrier protein signature 44 58 IPR002067 GO:0055085
Ssu1g3629 324 PRINTS Mitochondrial carrier protein signature 31 44 IPR002067 GO:0055085
Ssu1g3629 324 PRINTS Mitochondrial carrier protein signature 148 166 IPR002067 GO:0055085
Ssu1g3629 324 ProSiteProfiles Solute carrier (Solcar) repeat profile. 133 222 IPR018108 -
Ssu1g3629 324 PANTHER ADP,ATP CARRIER PROTEIN-RELATED 24 323 - -
Ssu1g3629 324 ProSiteProfiles Solute carrier (Solcar) repeat profile. 235 318 IPR018108 -
Ssu1g3629 324 SUPERFAMILY Mitochondrial carrier 25 314 IPR023395 -
Ssu1g3629 324 PRINTS Adenine nucleotide translocator signature 106 118 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Ssu1g3629 324 PRINTS Adenine nucleotide translocator signature 28 40 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Ssu1g3629 324 PRINTS Adenine nucleotide translocator signature 133 146 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Ssu1g3629 324 PRINTS Adenine nucleotide translocator signature 73 94 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Ssu1g3629 324 PRINTS Adenine nucleotide translocator signature 236 252 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3629 Ssu-Chr1 91866391 91872116 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3629 20 321 Antiporters AT5G17400 37.742 3.41e-64 203
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3629 K05863 - gmx:100797251 562.762