Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3627 atgaaggGAGTCACAGTGAAAGAAGAAGTAACAGTGGCATATGCAGCTGGTGCTTCAGCTCCAACATCTTCTTCGTCTTCATCCTCAACTTCGAACCTCTCCCCACAGCCAATGGAAGGGTTGCACGAGGTGGGCCCCCCTCCGTTTCTCACCAAAACCTTCGAAGTGGTGGAAGATCCATCCACCGACGACGTCGTTTCATGGAGCAAAGCGCGCAACAGTTTCGTCGTTTGGGACTCTCACAAGTTCTCCACCACCATCCTGCCTCGTTACTTCAAGCACAACAACTTCTCCAGCTTCGTCCGACAACTCAACACCTATGGTTTTAGAAAAGTTGATCCGGATAAATGGGAATTTGCGAACGAAGGGTTTTTGGCGGGGCAGAGAAGCTTGTTGAAGACGATCAAGAGGAGGAGGCACGTGACACAGACACAGTCACACGAGGGAGGAGGTGGGGCCTGCATCGAATTGGGGGAGTTTGGGTTGGAAGGTGAGATGGAGAGGTTGAGGAGAGACAGGACAGTGTTGATGGGTGAAATTGTGAGGTTGAGGCAGCAACAGCACAACTCAAGGGAGCTATTGTTGTCCATGGAGACTAGATTGCAAGCCACTGAGAAGAAACATAAACAGATGACGACTTTTCTTGCCAAAGCACTCAACAACCAGGCTTTTATTCAGCAGTTTCTTCAGAGGAATGCTCAGAAGAAAGAATTGCAAGGTGTTAGAAGGAAGAGGAGACTAACTGCTACCCCAAGTGTGGAGATTTTGCTGCAAGATCCTGTGATTGATGTGGCTGTGCCAATTGAAGAGGAATCGGATACTATTGAGTCCCAGATGGAGTCTCTTTTGTCAGCTGCTTGTGATGATGAGTCAAGCAGTGAAATCAAGGAGACAATGTTGGGTTCAGTTCCAATTGCAGGTGGGGGTAATTTGGGTTTGGTGAATGATGCTGTCTGGGAGGAGTTGCTGAGCCAAGATTTGGTTGCTGGGGATCCTGAGGATGATTTTGTGATTAGTGATTTTTCACAAATTGATGTTCCTGTGGAGGATTTGGTAGCGGAGCCTGATGAGTGGAGTGAGGATTTGCAGAACCTTGTGGATCATATGGGTTATCTTGGGTCCAAACCCTAG 1131 0.4801 MKGVTVKEEVTVAYAAGASAPTSSSSSSSTSNLSPQPMEGLHEVGPPPFLTKTFEVVEDPSTDDVVSWSKARNSFVVWDSHKFSTTILPRYFKHNNFSSFVRQLNTYGFRKVDPDKWEFANEGFLAGQRSLLKTIKRRRHVTQTQSHEGGGGACIELGEFGLEGEMERLRRDRTVLMGEIVRLRQQQHNSRELLLSMETRLQATEKKHKQMTTFLAKALNNQAFIQQFLQRNAQKKELQGVRRKRRLTATPSVEILLQDPVIDVAVPIEEESDTIESQMESLLSAACDDESSSEIKETMLGSVPIAGGGNLGLVNDAVWEELLSQDLVAGDPEDDFVISDFSQIDVPVEDLVAEPDEWSEDLQNLVDHMGYLGSKP 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3627 376 PRINTS Heat shock factor (HSF) domain signature 87 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ssu1g3627 376 PRINTS Heat shock factor (HSF) domain signature 49 72 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ssu1g3627 376 PRINTS Heat shock factor (HSF) domain signature 100 112 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ssu1g3627 376 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 22 326 IPR027725 -
Ssu1g3627 376 Coils Coil 166 186 - -
Ssu1g3627 376 Gene3D - 42 139 IPR036388 -
Ssu1g3627 376 MobiDBLite consensus disorder prediction 17 37 - -
Ssu1g3627 376 ProSitePatterns HSF-type DNA-binding domain signature. 88 112 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ssu1g3627 376 Pfam HSF-type DNA-binding 49 138 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ssu1g3627 376 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-6B 22 326 - -
Ssu1g3627 376 SUPERFAMILY "Winged helix" DNA-binding domain 45 138 IPR036390 -
Ssu1g3627 376 SMART hsfneu3 45 138 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ssu1g3627 376 MobiDBLite consensus disorder prediction 17 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3627 Ssu-Chr1 91809993 91811471 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3627 35 376 HSF AT2G26150 54.335 1.29e-125 363
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Ssu1g3627 HSF_DNA-bind 4.9e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3627 K09419 - gmx:100794605 579.711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0418 5 8697540 8700222 Ssu1g3627 1 91809993 91811471 PCT