Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3625 ATGGGTGCCTCAGGAAAATGGGTGAAGGCATTAATCGGACTCAAGAAACCAGACAAAGATGAACATGTGAAGGAGGGTGGTAAGGGCAAGAAGTGGAGGTTATGGAGGAGTTCTTCCGGGGACATGGGTTCATGGAAGGGTTTCAAAGGAAACCATAAAGCAGCTTCTGAAGGGTCTCATTCTCCACCTGTTGTAGCAGATGCTTTCACAGCCGCAGTAGCCACTGTGCTTCGAGCTCCACCTAAGGATTTCAGACTAGTCAAGCAAGAATGGGCGGCTATAAGAATCCAAACCGCTTTCCGCGCCTTCTTGGCAAGAAGGGCTTTGAGGGCATTGAAGGGAGTGGTGAGGATTCAAGCTCTTGTTCGGGGGAGACAGGTGAGGAAGCAGGCTGCGGTGACATTGAGGTGCATGCAGGCCTTGGTTCGTGTTCAGGCGCGAGTAAGAGCTTGTCGTGTGAGGATGTCCATAGAGGGGCAAGCTGTACAGAACATGCTTAACGAGCGACGCAGTAAGCTTGATCTTTTGAAGCAAGCTGAGGAAGGATGGTGTGACAGCAGAGGGACGTTGGAAGATGTTAAAGCTAAGATACAAATGAGGCAAGAAGGAGCTTTCAAAAGGGAAAGAGCAATTGCTTACTCTCTTGCTCAGAAGCAATGCAGGTCAACCCCAAGCTCTAATTCACGAACAAATGTCTCTTTTTCCTCTCTGAAGAATCACGAGATTAACAAAGCTAACTGGGGATGGAGTTGGTTGGAGCGCTGGATGGCAGCCAAGCCTTGGGAGAGTAGATTGATGGAACAATCTCAGGCTGAAGGCTTAGATAAAATTCCACCTCCAAAGAAGTTTGTGGAATCCTTTGTGAGCTCTAATTCCAAACCATGCCCGGTCAAAGTCAAGAAGAACAACGTGACAACAAGGGTTTCTGCTAGGCCCCCCCATGTTGGGTATGCTACTCGCTCATCCTCAAGTCCAAGTTCTGAGTTTCGATATGATGAGAGTTCTGCATCATCTTCCATTTGTACATCTACAACACCAATGTCTGGGAACACTTGTGACAGGACTGAGGATAGTGGTGGTAATGCCAGGCCCAATTACATGAACCTGACTCAGTCCACAAAGGCAAAGCAAAAGACAAGTAATCATGTGTATAATAGAGCTCAGAGGCAGCAGTCCATGGACGAGTTCCAATTTCTCAAGAGGGCAGCAGTTTTCTCTAATGGAGATTCCAAAAGCACTGCGGGCTCTGACCCTTCTTCAATCAACTTTTCTAGGCCACTTCACTTGGACAAGAGCTCAGTGATGGCACGGTGA 1314 0.4802 MGASGKWVKALIGLKKPDKDEHVKEGGKGKKWRLWRSSSGDMGSWKGFKGNHKAASEGSHSPPVVADAFTAAVATVLRAPPKDFRLVKQEWAAIRIQTAFRAFLARRALRALKGVVRIQALVRGRQVRKQAAVTLRCMQALVRVQARVRACRVRMSIEGQAVQNMLNERRSKLDLLKQAEEGWCDSRGTLEDVKAKIQMRQEGAFKRERAIAYSLAQKQCRSTPSSNSRTNVSFSSLKNHEINKANWGWSWLERWMAAKPWESRLMEQSQAEGLDKIPPPKKFVESFVSSNSKPCPVKVKKNNVTTRVSARPPHVGYATRSSSSPSSEFRYDESSASSSICTSTTPMSGNTCDRTEDSGGNARPNYMNLTQSTKAKQKTSNHVYNRAQRQQSMDEFQFLKRAAVFSNGDSKSTAGSDPSSINFSRPLHLDKSSVMAR 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3625 437 ProSiteProfiles IQ motif profile. 89 117 IPR000048 GO:0005515
Ssu1g3625 437 MobiDBLite consensus disorder prediction 287 309 - -
Ssu1g3625 437 MobiDBLite consensus disorder prediction 407 437 - -
Ssu1g3625 437 MobiDBLite consensus disorder prediction 407 427 - -
Ssu1g3625 437 PANTHER IQ CALMODULIN-BINDING MOTIF PROTEIN 1 436 - -
Ssu1g3625 437 MobiDBLite consensus disorder prediction 287 381 - -
Ssu1g3625 437 Gene3D - 87 140 - -
Ssu1g3625 437 PANTHER IQ-DOMAIN 5-RELATED 1 436 - -
Ssu1g3625 437 MobiDBLite consensus disorder prediction 316 381 - -
Ssu1g3625 437 ProSiteProfiles IQ motif profile. 113 140 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3625 Ssu-Chr1 91761880 91763930 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3625 1 427 IQD Protein Family AT2G26180 61.949 3.20e-151 434
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3625 - - gmx:100799714 699.508
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3625 1 91761880 91763930 Ssu1g3625 1 91761880 91763930 ECH
Ssu5g0421 5 8717195 8718824 Ssu1g3625 1 91761880 91763930 PCT