Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3617 ATGGCCCAAAAATCCAGGTGGTTTGGTTATTATTTTGCCATTTGTGGTTGGTCAAAGCTTGGTCAACGTGACGcccaaattaaacaaaaacgGACGGTGGAGGAGGAGACATGGGAAAGGTTAGTAGGGTCCGTCTTTGGTCGTCAATTTGGATGGGGTGTTCCGCTTCCATCTTCAGAGGACCGAGGTTGTCTTCTCCTTCCTCTCCTCGTTCCTCTTCCTCGTTTCAGTGGACCCAACCGGTGGCGGCACCCCCACATTAACATACAAACATGTCTGTTCAACAGCCATGTGCCGCCCCAAAGCAAAACATCACCATGGTGGCTGTTGACAAAGACAAGAACAGTGCCTATGCCTTCCGTTGGGCCGTTAATCATCTCGACAACCCCGTCATCATTGCCGTCCATGTCAAGCACAAAAACTTTTCTCATCGTAGATGTCACCAATGTTTTTCCACCTGACGAGGAGGATGTAGCCAATATTTTCAATACCTTGCGTGGAATGTGTAATCGCAAAGCTGTCACGATGAAAGAAGCCGTAATCGATGATAGTGATGTTATGAGAGGACTTCTAGAATTTGCAAACAGGAATGTCGTACATAGTATCGTCGTCGGTGCATCCGCAAAAAACCCTTTGTCAAGTCTCAAAATGTTTAAAGCCTATCAGTATCAGGATATACCAACGGCCATGGTCAAATCAGCCCCGGATTACTGCTCTGTATACATAATTTCCAAATTGAAGATTGTGTCAGTTCGATCAGCGGCACGATCAATTGCAAAAAGTTTTATCCCACCGAAACAACTTCCTGTGCAGCAGGCAATTCCATCGAGTGAATCAGAAGGTGGTGGATCAGCAAGGGGACAACCACCTAGAAGTAAAGGCACTTACGAAGGACCAGAACCAATGAGAATACAGGGACGTGAGAGGCCAAGGAGTACGGGAAGTATTATGTCAATAGACAACATTGATCTAAACACTCGTCCACGACATTGGTCAATGGATGAAAGAGAAATTGGAGGGCTCGGGGATCCTGATTTATCAGATTCCCTCGGGACATCATCAGCTCCCCAATCCTCAAAAGAACTTGAAGCCGAGATGAAAAGATTGAGGCTTGAACTGCAGCAAACTATGGACATGTACAGCTCAGCTTGCAAGCAAGCAATCTCAGCCAAAATCCAGGCAGAACAGATTCGTCAATGGAAAGTGGAAGAGGAACGTAAGGTTGAGGTAGTTAGGATGTCTCAAGAGGCAGCTCTTGCACTGGCAGAGAAGGAGAAGGCTAGAGCCAAAGCAGCAATGGAAGCAGCTGAGGAAGCCAGGAAGAGGGCTGAACAGGAAGCACAGAGAAGATTGGATGCAGAGATGAAGGCCAAGAGAGAGGCAGAAGAGAAGGATCGTGCATTAACTGCATTGGCTCAAAATGATAACCGGTATAGAAAATACACCATAGAGGAGATTGAAATAGCCACAGAAAAGTTCTCCCCATCAAACAAAATAGGTGAAGGTGGATATGGACCTGTGTATAAAGGCCAACTTGATCACACCCCAGCtgcaatcaaaattttaaggcCTGACGCTTCTCAGGGCAGGAAGCAGTTCCAACAAGAGGTTGAAGTACTAAGCTGCATTAGACATCCGCATATGGTCCTCCTCCTCGGTGCATGTCCCGAGCATGGGTGCTTGGTGTATGAATACATGGATTATGGTAGCTTAGAAGATAGATTATTCCGGAAAAATAACAGCAGGCCAATTTCATGGAAGAAACGGTTCCAAATAGCAGCTGAGATTGCAACTGCACTCCTCTTCCTTCACCAAAACAAGCCAGAGCCTATTGTGCACCGAGACCTTAAACCATCTAACATTCTCTTGGACAGGAATTACGTGAGTAAAATCAGTGATGTTGGTTTGGCACGGTTAGTCCCTCCTTCTGTAGCAGATACTGTGACACAATATTACATGACTTCGGCTGCTGGAACCTTTTGTTACATTGATCCTGAGTATCAACAAACGGGAATACTAACAACAAAATCAGACATATATTCACTGGGGATAATGCTGATGCAGATAATCACAGCCAAGCCTCCCATGGGTCTTGCTCACCAAGTTAGGAGGGCAATTGAGAAGGGCAAGTTTGAAGATGTGCTCGACCCTGTGGTCACTGATTGGCCAGTTGAAGAGGCTCTATCATTTGCCAAATTAGCAGGTGAACTGTGCAGAACTCAGCAAGAAGGACAGGCCAGATCTTGCAACAGTTGTGTTGCCAGAACTTAA 2271 0.454 MAQKSRWFGYYFAICGWSKLGQRDAQIKQKRTVEEETWERLVGSVFGRQFGWGVPLPSSEDRGCLLLPLLVPLPRFSGPNRWRHPHINIQTCLFNSHVPPQSKTSPWWLLTKTRTVPMPSVGPLIISTTPSSLPSMSSTKTFLIVDVTNVFPPDEEDVANIFNTLRGMCNRKAVTMKEAVIDDSDVMRGLLEFANRNVVHSIVVGASAKNPLSSLKMFKAYQYQDIPTAMVKSAPDYCSVYIISKLKIVSVRSAARSIAKSFIPPKQLPVQQAIPSSESEGGGSARGQPPRSKGTYEGPEPMRIQGRERPRSTGSIMSIDNIDLNTRPRHWSMDEREIGGLGDPDLSDSLGTSSAPQSSKELEAEMKRLRLELQQTMDMYSSACKQAISAKIQAEQIRQWKVEEERKVEVVRMSQEAALALAEKEKARAKAAMEAAEEARKRAEQEAQRRLDAEMKAKREAEEKDRALTALAQNDNRYRKYTIEEIEIATEKFSPSNKIGEGGYGPVYKGQLDHTPAAIKILRPDASQGRKQFQQEVEVLSCIRHPHMVLLLGACPEHGCLVYEYMDYGSLEDRLFRKNNSRPISWKKRFQIAAEIATALLFLHQNKPEPIVHRDLKPSNILLDRNYVSKISDVGLARLVPPSVADTVTQYYMTSAAGTFCYIDPEYQQTGILTTKSDIYSLGIMLMQIITAKPPMGLAHQVRRAIEKGKFEDVLDPVVTDWPVEEALSFAKLAGELCRTQQEGQARSCNSCVART 756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3617 756 Coils Coil 410 464 - -
Ssu1g3617 756 SMART serkin_6 493 753 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g3617 756 PANTHER OS02G0152300 PROTEIN 153 734 - -
Ssu1g3617 756 Pfam Protein kinase domain 496 729 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g3617 756 PANTHER KINASE WITH ADENINE NUCLEOTIDE ALPHA HYDROLASES-LIKE DOMAIN-CONTAINING PROTEIN 153 734 - -
Ssu1g3617 756 Gene3D Phosphorylase Kinase; domain 1 462 565 - -
Ssu1g3617 756 MobiDBLite consensus disorder prediction 268 361 - -
Ssu1g3617 756 ProSiteProfiles Protein kinase domain profile. 493 756 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g3617 756 Coils Coil 359 379 - -
Ssu1g3617 756 MobiDBLite consensus disorder prediction 327 342 - -
Ssu1g3617 756 ProSitePatterns Serine/Threonine protein kinases active-site signature. 611 623 IPR008271 GO:0004672|GO:0006468
Ssu1g3617 756 Gene3D Transferase(Phosphotransferase) domain 1 566 754 - -
Ssu1g3617 756 SUPERFAMILY Protein kinase-like (PK-like) 477 703 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3617 Ssu-Chr1 91618447 91623452 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3617 176 733 Receptor kinase-like Gene Family AT5G12000 59.966 0.0 673
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Ssu1g3617 Pkinase 3.3e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3617 - - gmx:100798861 915.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3617 1 91618447 91623452 Ssu1g3617 1 91618447 91623452 ECH