Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3613 ATGGAGGAGATGTCAACCACGGTTACAGTGCCATCAAGAGTAGGTAATTCAGTGTGTGATAAGCCAACCATAGCTACCCACATGGATGTATCCAGAATTAAGCTGATGACAGATGCAGGGTTGTTATCCAATTCTATAACTAAGGTTTCCACTGAGACTTTTACAGGTTCGGATGAGGATCATGACAGTGGCCATCTGGAGGATGAAGATGGTATTACAGCAGTCACACCTCCAGAGCcaggaagagaaggagaaatTCCTTTGTTGGACATGATATCGCAAAATACAAGCTCGTTGGTTGTTGGTGATGAAGTTTTAATCCCAGAAATTGAGGAGGATGATTTGATATCACTTGAAGGTGATCCAATTATTGATAGCTCTTCTCTTTCAGTAGCCAGTGAGAATAGTAGTGTTTGTGGAGATGAGTTCATCAGTTCTGAGGTTTTTTCAGATTTAGGGACAACAAGTTCCATAGACATAAAGAAGAGCATGGCTGCGTTTAAAATTGCAGCCAGGGCTGCTGATTTGGGTGAGTCAAATGTAGAGGCAGATGTTATGAGTGAACCCCTTGTTGTAGCAGTGAACCTTGAAGAGACAGGAGTTAGATCTGGCCCAAGGCCTACTACAGGTGTTCTTCATCAACCAACTCTGGAAAGATCTGTGAGTGGAACAGTTGGTAGAAGTGTTTTTGAATTAGATTGTACCCCACTTTGGGGATTTAAATCTGTGTGTGGAAAAAGGCCTGAGATGGAAGATGCAGTTGCAACTGTACCTCgatttttgaaaattcctaTTCAAATGCTAATTGGTGATAGGGTACCTGATGGAATAAACAAATGTTTCAGTCAGCagacaatacatttttttggaGTTTATGATGGCCATGGTGGCTCTCAGGTGGCAAATTATTGCCGTGAGCGCATGCATTTGGCCTTGGCTGAGGAAATAGAATTGGTCAAGGAAGGTCTATTAGTTGAATGTACCAAGGATGATTGTCGAGATCTGTGGAAAAAAGCTTTCACCAATTGTTTTTTGAAGGTTGATTCTGAAGTTGGGGGGGAAGTTAATAGTGAGCCTGTTGCCCCAGAAACTGTTGGATCCACTTCTGTTGTTGCTATTATCTGTTCATCTCATATCATAGTTTCAAACTGTGGTGATTCAAGAGCGGTTCTGTGTCGTGGCAAAGAACCCATGGCCCTATCTGTTGATCATAAACCAAATCGAGATGATGAATATGCAAGAATTGAGGCAGCTGGAGGCAAGGTGATACAATGGAATGGTCACCGAGTATTTGGTGTTCTTGCAATGTCAAGGTCTATTGGTGACAGGTATTTGAAGCCATGGATTATTCCAGACCCTGAGGTGATGTTTCTTCCTCGCGCAAAAGATGATGAATGCCTCATTCTGGCAAGTGACGGTCTGTGGGATGTTATGACAAATGAAGAGGTGTGTGACATTGCTCGGCGGCGCATGCTTCACTGGCACAAGAAAAATGGCTTGGCACTGCCCTCAGAAAGGGGAGAGGGAATTGATCCTGCTGCACAAGCAGCCGCAGAGTACCTATCAAACCGTGCTCTTCAGAAAGGTAGCAAAGACAACATCACTGTGATTGTGGTGGATTTGAAAGCTCAAAGAAAATTTAAGTGCAAGACATGA 1656 0.4215 MEEMSTTVTVPSRVGNSVCDKPTIATHMDVSRIKLMTDAGLLSNSITKVSTETFTGSDEDHDSGHLEDEDGITAVTPPEPGREGEIPLLDMISQNTSSLVVGDEVLIPEIEEDDLISLEGDPIIDSSSLSVASENSSVCGDEFISSEVFSDLGTTSSIDIKKSMAAFKIAARAADLGESNVEADVMSEPLVVAVNLEETGVRSGPRPTTGVLHQPTLERSVSGTVGRSVFELDCTPLWGFKSVCGKRPEMEDAVATVPRFLKIPIQMLIGDRVPDGINKCFSQQTIHFFGVYDGHGGSQVANYCRERMHLALAEEIELVKEGLLVECTKDDCRDLWKKAFTNCFLKVDSEVGGEVNSEPVAPETVGSTSVVAIICSSHIIVSNCGDSRAVLCRGKEPMALSVDHKPNRDDEYARIEAAGGKVIQWNGHRVFGVLAMSRSIGDRYLKPWIIPDPEVMFLPRAKDDECLILASDGLWDVMTNEEVCDIARRRMLHWHKKNGLALPSERGEGIDPAAQAAAEYLSNRALQKGSKDNITVIVVDLKAQRKFKCKT 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3613 551 Pfam Protein phosphatase 2C 272 534 IPR001932 -
Ssu1g3613 551 ProSitePatterns PPM-type phosphatase domain signature. 288 296 IPR000222 GO:0043169
Ssu1g3613 551 Gene3D - 224 551 IPR036457 -
Ssu1g3613 551 SMART PP2C_4 227 539 IPR001932 -
Ssu1g3613 551 MobiDBLite consensus disorder prediction 54 69 - -
Ssu1g3613 551 ProSiteProfiles PPM-type phosphatase domain profile. 237 541 IPR001932 -
Ssu1g3613 551 MobiDBLite consensus disorder prediction 52 79 - -
Ssu1g3613 551 SUPERFAMILY PP2C-like 233 542 IPR036457 -
Ssu1g3613 551 PANTHER ALPHABET, ISOFORM E-RELATED 110 551 - -
Ssu1g3613 551 CDD PP2Cc 239 541 IPR001932 -
Ssu1g3613 551 PANTHER PROTEIN PHOSPHATASE 2C FAMILY PROTEIN 110 551 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3613 Ssu-Chr1 91562135 91565686 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3613 1 551 PP2C-type Phosphatase Gene Family AT1G17550 48.227 2.02e-161 468
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3613 K14497 - gmx:102662702 969.533