Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3612 atggaGGATCTCGAGGAGGAAGAGAACGGAGCTGAGGAGGTGTTGGGGTCAAGCTTGACCATGGAAAAGGTGGCGGCGGCGAAGAAGTTCATTGAGAACCATTATAGGGCTCAGATGAAGAACATCCAAGAGAGGAAGGAGAGGCGCTGggttttagaaagaaaattagcTTCTTCGGATGTGCCAAATGAGGAGCGGATCAACCTCATCAAAGATTTAGAGAGGAAGGAGACTGAATATATGCGATTGAAAAGGCACAAGATTTGTGTTAATGATTTTGAGCTTTTGACCATCATTGGAAGGGGGGCTTTTGGGGAGGTTAGACTGTGTCGGGAGAAGAAATCTGGAAATATTTATGCTATGAAAAAGCTGAAGAAATCTGAAATGCTTAGGAGAGGCCAGGTGGAACATGTTAGAGCTGAGAGAAACTTGCTGGCCGAAGTTGCCAGTCATTGCATTGTGAAACTTTACTACTCATTTCAGGATGCTGACTACTTGTATTTAATTATGGAGTATCTTCCTGGGGGTGATGTTATGACTCTGCTGATGAGGGAAGACACCTTAAGTGAAAATGTTGCTGGATTTTACATTGCACAAAGTGTTCTGGCTATAGAATCCATTCACAAACACAATTACATTCACAGAGATATTAAACCTGATAACCTACTTCTGGATAAAAATGGTCACATGAAGCTCTCTGATTTTGGTCTCTGTAAGCCTCTCGATTGTATTGCCTTGTCTACACTGCATGAAAATCAGACCATGGATGATGAAACTTTGGCAGAACCAATGGATGTTGATGGATGTTTTCCTGATGCGGACAATCGGAGCAGCTGGAGAAGTCCACGTGAACAGCTTCAACATTGGCAAATGAACAGGAGGAAGTTGGCATTTTCAACAGTGGGGACACCAGACTACATTGCTCCTGAAGTACTTTTGAAAAAAGGATATGGGATGGAATGTGATTGGTGGTCACTGGGAGCAATAATGTATGAAATGCTGGTTGGTTACCCTCCATTTTACTCCGATGACCCAATAACCACATGCAGAAAGATCGTTCATTGGAGAAATCATTTAAGGTTTCCAGAAGATGCCCATTTAACACTTGAGGCTAAGGATCTAATGTATAGGTTGCTGTGTGATGTTGATCATAGGTTAGGTACTCGAGGGGCCCATGAAATAAAGGCTCATCCTTGGTTCAAGGGTGTGGAGTGGGATAAACTGTATGAAATGGAGGCAGCATTTAAACCTCAAGTCAATGGGGAGCTGGATACCCAAAACTTCATGAAGTTTGATGAGGTAGATCCACCAGCAGCAGCAAGAACTGGGTCTGGATCCTCACGAAAGATGCTTCTAACTCCCAAAGATCTAAACTTCGTTGGTTACACTTACAAGAACTTCGATGCTGTAAAGGAAGGGCTTCGTCAATCTTTTGGTGATTCCATGCAAGATTATGCTTCTAAACGGGCAGCTGAAGAAACAAGTTTACAAATGCTTGCGTCATCTGGGGATCCCATGTTACCGTAA 1527 0.4257 MEDLEEEENGAEEVLGSSLTMEKVAAAKKFIENHYRAQMKNIQERKERRWVLERKLASSDVPNEERINLIKDLERKETEYMRLKRHKICVNDFELLTIIGRGAFGEVRLCREKKSGNIYAMKKLKKSEMLRRGQVEHVRAERNLLAEVASHCIVKLYYSFQDADYLYLIMEYLPGGDVMTLLMREDTLSENVAGFYIAQSVLAIESIHKHNYIHRDIKPDNLLLDKNGHMKLSDFGLCKPLDCIALSTLHENQTMDDETLAEPMDVDGCFPDADNRSSWRSPREQLQHWQMNRRKLAFSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDDPITTCRKIVHWRNHLRFPEDAHLTLEAKDLMYRLLCDVDHRLGTRGAHEIKAHPWFKGVEWDKLYEMEAAFKPQVNGELDTQNFMKFDEVDPPAAARTGSGSSRKMLLTPKDLNFVGYTYKNFDAVKEGLRQSFGDSMQDYASKRAAEETSLQMLASSGDPMLP 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3612 508 ProSitePatterns Serine/Threonine protein kinases active-site signature. 212 224 IPR008271 GO:0004672|GO:0006468
Ssu1g3612 508 Pfam Protein kinase domain 94 241 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g3612 508 Pfam Protein kinase domain 292 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g3612 508 CDD STKc_NDR_like 91 465 - -
Ssu1g3612 508 Gene3D Phosphorylase Kinase; domain 1 64 176 - -
Ssu1g3612 508 ProSiteProfiles Protein kinase domain profile. 93 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g3612 508 SUPERFAMILY Protein kinase-like (PK-like) 90 442 IPR011009 -
Ssu1g3612 508 Gene3D Phosphorylase Kinase; domain 1 419 429 - -
Ssu1g3612 508 PANTHER AGC (CAMP-DEPENDENT, CGMP-DEPENDENT AND PROTEIN KINASE C) KINASE FAMILY PROTEIN 13 489 - -
Ssu1g3612 508 PANTHER SERINE/THREONINE-PROTEIN KINASE 13 489 - -
Ssu1g3612 508 Gene3D Transferase(Phosphotransferase) domain 1 177 241 - -
Ssu1g3612 508 SMART pkinase_C_6 401 466 IPR000961 GO:0004674|GO:0005524|GO:0006468
Ssu1g3612 508 ProSitePatterns Protein kinases ATP-binding region signature. 99 122 IPR017441 GO:0005524
Ssu1g3612 508 ProSiteProfiles AGC-kinase C-terminal domain profile. 401 474 IPR000961 GO:0004674|GO:0005524|GO:0006468
Ssu1g3612 508 Pfam Protein kinase C terminal domain 419 464 IPR017892 GO:0004674|GO:0005524|GO:0006468
Ssu1g3612 508 Gene3D Transferase(Phosphotransferase) domain 1 299 418 - -
Ssu1g3612 508 SMART serkin_6 93 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3612 Ssu-Chr1 91543651 91556683 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3612 1 507 AGC Kinase Gene Family AT4G33080 80.784 0.0 849
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Ssu1g3612 Pkinase 1.8e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3612 K08790 - gmx:100815717 980.319