Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3603 ATGAGTTTGGGAGCCGCCGAGGACGATTCGGGTTCAGAAATCCACATCCCAGCGGAGATTGACTGGCACATGCTCGACAAGTCCAAGTTCTTCTTCCTCGGCGCCGCCCTATTCTCGGGTGTTTCCTTCGCACTCTATCCCATGGTCGTGTTGAAGACGCGCCAGCAAGTTTCCTCGGCGCGCATCTCGTGCCTCAACATGTCCTGTGCCATTATGCGCTACGAGGGCTTCAGGGGCTTCTACAAAGGCTTCGGCACCTCCCTCATGGGAACCGTCCCCGCGCGTGCACTCTACATGGCTTCCCTCGAGGTCACTAAGAGCAACGTTGGCACTGCTTTTGTCGAATTGGGGTTCTCGGAGACCACGGCGATTGCAGTGGCTAATGCTGCTGCGGGTGTTACTTCTGCCATGGCGGCGCAATTAGTTTGGACCCCAGTTGATGTTGTGAGTCAACGACTCATGGTTCAGGGGAGTGGAGGGAGCAAGAGCGTGCTTGCGAATCTCAACTCTGACAGTTACAGAAATGGGTTTGACGCGTTCAGGAAGATTCTGTGTGCCGATGGAGCGAGAGGGTTCTATAGAGGGTTTGGGATTTCTATTTTGACTTATGCACCTTCCAATGCGGTTTGGTGGACTTCTTATTCGATGGTGCATAGACTCATTTGGAGtgcttttggttcttatatggGTAAGAGtacaagaaatgaaaagaatgaTAATTTGGGAAACGGGTGTGGCGGTTTTAGGCCTGATTCGAAGGCAATGGTGGCGGTTCAAGGGTTGAGTGCGGTTGTGGCTAGTGGGGTGTCTGCAATTGTGACAATGCCGCTTGATACGATTAAGACGAGGTTGCAGGTGTTGGATATGGAGGAGAATGGGCGAAGGAGGCCGTTAACTTTTGTGCAAACGGTTAGGAATTTGGTGAAGGAAGGTGGGTTGCTTGCTTGTTACAGAGGATTGGGGCCGAGATGGGCTTCCATGTCCATGTCTGCCACAACTATGATTACTACTTATGAGTTTCTCAAACGAATGTCTACTAAGAGTCGAGAGAACTTGACTGCATGA 1065 0.4995 MSLGAAEDDSGSEIHIPAEIDWHMLDKSKFFFLGAALFSGVSFALYPMVVLKTRQQVSSARISCLNMSCAIMRYEGFRGFYKGFGTSLMGTVPARALYMASLEVTKSNVGTAFVELGFSETTAIAVANAAAGVTSAMAAQLVWTPVDVVSQRLMVQGSGGSKSVLANLNSDSYRNGFDAFRKILCADGARGFYRGFGISILTYAPSNAVWWTSYSMVHRLIWSAFGSYMGKSTRNEKNDNLGNGCGGFRPDSKAMVAVQGLSAVVASGVSAIVTMPLDTIKTRLQVLDMEENGRRRPLTFVQTVRNLVKEGGLLACYRGLGPRWASMSMSATTMITTYEFLKRMSTKSRENLTA 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3603 354 PRINTS Mitochondrial carrier protein signature 81 99 IPR002067 GO:0055085
Ssu1g3603 354 PRINTS Mitochondrial carrier protein signature 132 154 IPR002067 GO:0055085
Ssu1g3603 354 ProSiteProfiles Solute carrier (Solcar) repeat profile. 26 108 IPR018108 -
Ssu1g3603 354 ProSiteProfiles Solute carrier (Solcar) repeat profile. 123 220 IPR018108 -
Ssu1g3603 354 Pfam Mitochondrial carrier protein 126 222 IPR018108 -
Ssu1g3603 354 Pfam Mitochondrial carrier protein 35 108 IPR018108 -
Ssu1g3603 354 Pfam Mitochondrial carrier protein 257 348 IPR018108 -
Ssu1g3603 354 Gene3D Mitochondrial carrier domain 29 353 IPR023395 -
Ssu1g3603 354 SUPERFAMILY Mitochondrial carrier 23 341 IPR023395 -
Ssu1g3603 354 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER-LIKE PROTEIN 1 351 - -
Ssu1g3603 354 ProSiteProfiles Solute carrier (Solcar) repeat profile. 254 344 IPR018108 -
Ssu1g3603 354 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J 1 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3603 Ssu-Chr1 91451045 91452109 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3603 1 350 Chloroplast and Mitochondria Gene Families AT5G26200 64.903 4.19e-164 460
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3603 K15121 - gmx:100784202 582.022
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3603 1 91451045 91452109 Ssu1g3603 1 91451045 91452109 ECH
Ssu1g3603 1 91451045 91452109 Ssu5g0448 5 9344208 9345903 ECH