Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3602 ATGGATAATAACTCCGAGTTTGTTCCGTACGGGACTGACCCATTTGACAGTCCACTTCTGCAAAACTTTATCGAGATGGACCCTGCACTTGTCTATTTATCCAACGATGAACCCAATGTACTGCCCCAACAACAAAATGATCCTGTTGACGTTCAACAGAGTAATGTTCCCTTCCCGGATTCAACTATCCAAAATCAATTCGTGCAGGACAATAATAATTTTCCCATTGAAGGAGAAATTGGTAACTTTGAAGTGGCTCCATCAAGGAGAAATGGTAAGGAACCGTTGATCCAAGATCAATTGATGTAtggcaataataattttttcaatagaaGAGGAATGGGTAACTTTGAAACGGGTCCATGGACGCAAGAGAATCAAAGTCAGCCGGCAAATGAGAATATGGGTCTACAGAATTACGAAGAAGTGATCTCACTACCGTATTGGCCCCCGATACCGAGGCCATTCTTTTGCAGTTGCTGTCATGTTCTTAGACAAATAGTTCACACCAATGgTTCTAAGTTTGAGAAGCTTGAGATTCATGGAACGATCGGGGTGATTAGCCATGCAATAATCCAGATTCAGAATATCACACCGGGTGGTCCTTCAAGTGACTCTCATCAAATGATTGATTTCTGCTACAGAAACGCAGAACAAATTAAGAGTTTCATAGTAAAGTACTGTGCACAGCAAATTGAATTAGGGTACATTATTGTGCAAGATCCGTTGTCTGCGTATTATGAGGCCCTCTGCACTGGACTGGACTGGGCTAAAGATTTCAGTGACGAAGACGATGATTTGATTCCACGTTGCCGAGCCGAGCCCGAGCCTGAGCCTGAGCCTGAGAATAGAAGGACTTCAACTTCTAGACGACGCCATATGGGACATCAGAGGAAGAGAATAAAAAGGATGACATTGAGTGATTTGAGCGGTGTCTTCCATATACCTATTGAGGATGCAGCGTACCAACTGGGCGTATGCCTCACTGTCGTAAAGAATATTTGCCGCAGGGCACATTTAGAAAGATGGCCCCACAGAAAGGTGGTAAGCAATGTGAAGCAGGTGGCAGTACTCAGAAGAGGATTGGATTCACCAGATCCAGGGACAAGGGAAACAACCCGAGCGGAAATTCAAAGACTTCAAGAAGAAATAATTGAGAGGTATAATACTGGTCAGTCCACACCGAATTTCCACAACAATCCCTCTGACCACCATTCTTCACCAGGCGGAGGCAATTTCCAAAGGCGGCTTTCCCCCAACAACCCCTCTAACCATCGTTTATTGTTGCTGGAGGCGATTTTTGGTAGTagcgttttaattttttttctacttttctcaCCACCTTCACCCTTTCCTCCCTCCTCTCTGGCGATCTCTTTAGTGTCGACAGCCCTATCGACCGTTGCCTTCGCCATCGCCATGTTGATCGCAGTCCTTGAAACTCTCATGTACGCCCTTATCGAGCTCGAATCTGCGTTCTATTCCCTCGCTTTTGATGAAGACTTCTCTTCCACTTTACCATTCTCACCCCAAACCCCACTTCGATTTTCGCCAAACTACAAAAAGGTCTcttccaaaaccaaaaaagtttcCATCTTTTGTAGAAGGAGCTCGAGGGACACTACGAGATTACGTGGGTTGCGAGAGCCCCTCTACCTCATGGAGAGGCTGATATGGCATTACGTGGCAACAGTGGAGAGCCTACAGGTGTATCTAAAGAGGGAGGATTTGAACCACACAGGTGCGCACAAGATCAACAATGCAATTGCTCAGGCCCTGCTTGACAAGCGGTTGGGGAAAAGAAGGGTCATTACTGAGAGCAGTGCCTAG 1830 0.4426 MDNNSEFVPYGTDPFDSPLLQNFIEMDPALVYLSNDEPNVLPQQQNDPVDVQQSNVPFPDSTIQNQFVQDNNNFPIEGEIGNFEVAPSRRNGKEPLIQDQLMYGNNNFFNRRGMGNFETGPWTQENQSQPANENMGLQNYEEVISLPYWPPIPRPFFCSCCHVLRQIVHTNGSKFEKLEIHGTIGVISHAIIQIQNITPGGPSSDSHQMIDFCYRNAEQIKSFIVKYCAQQIELGYIIVQDPLSAYYEALCTGLDWAKDFSDEDDDLIPRCRAEPEPEPEPENRRTSTSRRRHMGHQRKRIKRMTLSDLSGVFHIPIEDAAYQLGVCLTVVKNICRRAHLERWPHRKVVSNVKQVAVLRRGLDSPDPGTRETTRAEIQRLQEEIIERYNTGQSTPNFHNNPSDHHSSPGGGNFQRRLSPNNPSNHRLLLLEAIFGSSVLIFFLLFSPPSPFPPSSLAISLVSTALSTVAFAIAMLIAVLETLMYALIELESAFYSLAFDEDFSSTLPFSPQTPLRFSPNYKKVSSKTKKVSIFCRRSSRDTTRLRGLREPLYLMERLIWHYVATVESLQVYLKREDLNHTGAHKINNAIAQALLDKRLGKRRVITESSA 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3602 609 PANTHER PROTEIN RKD4 38 386 IPR044607 GO:0003700
Ssu1g3602 609 MobiDBLite consensus disorder prediction 267 288 - -
Ssu1g3602 609 Gene3D - 535 609 IPR036052 -
Ssu1g3602 609 ProSiteProfiles RWP-RK domain profile. 284 372 IPR003035 -
Ssu1g3602 609 MobiDBLite consensus disorder prediction 267 298 - -
Ssu1g3602 609 Pfam RWP-RK domain 304 348 IPR003035 -
Ssu1g3602 609 PANTHER RWP-RK DOMAIN PROTEIN 38 386 - -
Ssu1g3602 609 MobiDBLite consensus disorder prediction 391 418 - -
Ssu1g3602 609 ProSitePatterns Tryptophan synthase beta chain pyridoxal-phosphate attachment site. 577 591 IPR006653 GO:0004834|GO:0006568
Ssu1g3602 609 SUPERFAMILY Tryptophan synthase beta subunit-like PLP-dependent enzymes 566 609 IPR036052 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3602 Ssu-Chr1 91433776 91439130 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3602 278 364 NLP Transcription Factor Family AT1G64530 34.483 1.50e-07 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Ssu1g3602 RWP-RK 2.6e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3602 - - ccaj:109790026 362.459