LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu1g3602	ATGGATAATAACTCCGAGTTTGTTCCGTACGGGACTGACCCATTTGACAGTCCACTTCTGCAAAACTTTATCGAGATGGACCCTGCACTTGTCTATTTATCCAACGATGAACCCAATGTACTGCCCCAACAACAAAATGATCCTGTTGACGTTCAACAGAGTAATGTTCCCTTCCCGGATTCAACTATCCAAAATCAATTCGTGCAGGACAATAATAATTTTCCCATTGAAGGAGAAATTGGTAACTTTGAAGTGGCTCCATCAAGGAGAAATGGTAAGGAACCGTTGATCCAAGATCAATTGATGTAtggcaataataattttttcaatagaaGAGGAATGGGTAACTTTGAAACGGGTCCATGGACGCAAGAGAATCAAAGTCAGCCGGCAAATGAGAATATGGGTCTACAGAATTACGAAGAAGTGATCTCACTACCGTATTGGCCCCCGATACCGAGGCCATTCTTTTGCAGTTGCTGTCATGTTCTTAGACAAATAGTTCACACCAATGgTTCTAAGTTTGAGAAGCTTGAGATTCATGGAACGATCGGGGTGATTAGCCATGCAATAATCCAGATTCAGAATATCACACCGGGTGGTCCTTCAAGTGACTCTCATCAAATGATTGATTTCTGCTACAGAAACGCAGAACAAATTAAGAGTTTCATAGTAAAGTACTGTGCACAGCAAATTGAATTAGGGTACATTATTGTGCAAGATCCGTTGTCTGCGTATTATGAGGCCCTCTGCACTGGACTGGACTGGGCTAAAGATTTCAGTGACGAAGACGATGATTTGATTCCACGTTGCCGAGCCGAGCCCGAGCCTGAGCCTGAGCCTGAGAATAGAAGGACTTCAACTTCTAGACGACGCCATATGGGACATCAGAGGAAGAGAATAAAAAGGATGACATTGAGTGATTTGAGCGGTGTCTTCCATATACCTATTGAGGATGCAGCGTACCAACTGGGCGTATGCCTCACTGTCGTAAAGAATATTTGCCGCAGGGCACATTTAGAAAGATGGCCCCACAGAAAGGTGGTAAGCAATGTGAAGCAGGTGGCAGTACTCAGAAGAGGATTGGATTCACCAGATCCAGGGACAAGGGAAACAACCCGAGCGGAAATTCAAAGACTTCAAGAAGAAATAATTGAGAGGTATAATACTGGTCAGTCCACACCGAATTTCCACAACAATCCCTCTGACCACCATTCTTCACCAGGCGGAGGCAATTTCCAAAGGCGGCTTTCCCCCAACAACCCCTCTAACCATCGTTTATTGTTGCTGGAGGCGATTTTTGGTAGTagcgttttaattttttttctacttttctcaCCACCTTCACCCTTTCCTCCCTCCTCTCTGGCGATCTCTTTAGTGTCGACAGCCCTATCGACCGTTGCCTTCGCCATCGCCATGTTGATCGCAGTCCTTGAAACTCTCATGTACGCCCTTATCGAGCTCGAATCTGCGTTCTATTCCCTCGCTTTTGATGAAGACTTCTCTTCCACTTTACCATTCTCACCCCAAACCCCACTTCGATTTTCGCCAAACTACAAAAAGGTCTcttccaaaaccaaaaaagtttcCATCTTTTGTAGAAGGAGCTCGAGGGACACTACGAGATTACGTGGGTTGCGAGAGCCCCTCTACCTCATGGAGAGGCTGATATGGCATTACGTGGCAACAGTGGAGAGCCTACAGGTGTATCTAAAGAGGGAGGATTTGAACCACACAGGTGCGCACAAGATCAACAATGCAATTGCTCAGGCCCTGCTTGACAAGCGGTTGGGGAAAAGAAGGGTCATTACTGAGAGCAGTGCCTAG	1830	0.4426	MDNNSEFVPYGTDPFDSPLLQNFIEMDPALVYLSNDEPNVLPQQQNDPVDVQQSNVPFPDSTIQNQFVQDNNNFPIEGEIGNFEVAPSRRNGKEPLIQDQLMYGNNNFFNRRGMGNFETGPWTQENQSQPANENMGLQNYEEVISLPYWPPIPRPFFCSCCHVLRQIVHTNGSKFEKLEIHGTIGVISHAIIQIQNITPGGPSSDSHQMIDFCYRNAEQIKSFIVKYCAQQIELGYIIVQDPLSAYYEALCTGLDWAKDFSDEDDDLIPRCRAEPEPEPEPENRRTSTSRRRHMGHQRKRIKRMTLSDLSGVFHIPIEDAAYQLGVCLTVVKNICRRAHLERWPHRKVVSNVKQVAVLRRGLDSPDPGTRETTRAEIQRLQEEIIERYNTGQSTPNFHNNPSDHHSSPGGGNFQRRLSPNNPSNHRLLLLEAIFGSSVLIFFLLFSPPSPFPPSSLAISLVSTALSTVAFAIAMLIAVLETLMYALIELESAFYSLAFDEDFSSTLPFSPQTPLRFSPNYKKVSSKTKKVSIFCRRSSRDTTRLRGLREPLYLMERLIWHYVATVESLQVYLKREDLNHTGAHKINNAIAQALLDKRLGKRRVITESSA	609

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Ssu1g3602	609	PANTHER	PROTEIN RKD4	38	386	IPR044607	GO:0003700
Ssu1g3602	609	MobiDBLite	consensus disorder prediction	267	288	-	-
Ssu1g3602	609	Gene3D	-	535	609	IPR036052	-
Ssu1g3602	609	ProSiteProfiles	RWP-RK domain profile.	284	372	IPR003035	-
Ssu1g3602	609	MobiDBLite	consensus disorder prediction	267	298	-	-
Ssu1g3602	609	Pfam	RWP-RK domain	304	348	IPR003035	-
Ssu1g3602	609	PANTHER	RWP-RK DOMAIN PROTEIN	38	386	-	-
Ssu1g3602	609	MobiDBLite	consensus disorder prediction	391	418	-	-
Ssu1g3602	609	ProSitePatterns	Tryptophan synthase beta chain pyridoxal-phosphate attachment site.	577	591	IPR006653	GO:0004834\|GO:0006568
Ssu1g3602	609	SUPERFAMILY	Tryptophan synthase beta subunit-like PLP-dependent enzymes	566	609	IPR036052	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu1g3602	Ssu-Chr1	91433776	91439130	Proximal

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu1g3602	278	364	NLP Transcription Factor Family	AT1G64530	34.483	1.50e-07	52.8

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	RWP-RK	Ssu1g3602		RWP-RK	2.6e-18	No_clan

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu1g3602	-		-	ccaj:109790026	362.459

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