LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu1g3599	ATGGATAATAACTCCGGGTTTGTTCCATATGGTACTGACCCATTTGACAGTCCACTTCTCCAAAACTTTATCGAGATGGATCCCGCACTTGTCTATTTATCCAATGATGGACCCAGTGCACTGCCCCAGCAACAAAATGATCCTGTTGGCGTTCAACAGAGTAATGTTTCCTTCACGGAACCAACGATCCAAAATCAATCCATGCggaccaataataatttttccattgGAGGAGAATTTGGTAACTTTGAAGCGGGTCCATCAAGAAGGAATAGTAAGGAACCGATAATCCAAGATCAATTCATGCATGgtaataatgattttttcaaTGGAGGAGGAATTGGTAACTTCGGACCGGGTCCATGGACGCAAGGGAATCAAAGTGAGCAGACATATGAGAATATGGGTCCACAGAATTACCAAGAAGTGATCTCACTTCCGTTTTGGCCTCCGTTACCAAGGCCATTCTTTTGCAGTTGCTGTCAAGTTCTTAGACAAATCATTCACACCAATGGTTCTACGTTTGAGAAGCTTGAGATTCATGGAAGGATCGGGCTGATTAGCCATGCAATAATCCAGATTCAGAGTATCACACCGGTTGGTCCTTCAAGTGACTCTCATCAAATGATTGATTTCTACTACAGAAATGCAGAACAAATTAAGAGTTTCCTAGAACGTTACTGTGAACAGCAGAATGAATTAGGGTACGTTATCGTGGAAGATCCGTTGTCTGCATATTATGAGGCCCTTTGCGCTGGACTGGATTGGGCTGAAGATTTAAGTGACGAAGACGATGATTTTATTCCACCAAATGACATGGAGCCTGAGTCTGAGCCTGAACCTGAGAATGGAACGGCTTCAACTTCTAGACCTAATCGCGGAATTCAGATAGAGAGAGTAGCAAGAATGACATTGAGTGATTTGAGCGGTGTCTTCCATATACCAATTAAGGCTGCAGCGAAACAACTGGACATATGCCCTTCTGCCGTGAAGAAAATCTGCCGCAGGGCAGATTTAAAAAGATGGCCCCAAAGAAAGGTGAAAAGCCTTATGAAGCGGGTGGCAGTACTCAAAAGCGGATTGGATTCACCAGATCCAGGGACAAGGGCAAGAACTCGAGCGGAAATTGGAAGACTTCAACAAGAAATAATTGAGTGGTTGACTTGTGCAACGGACTGGTTGTACAAGAGACCCAGATGTTTTCTTCCCGTGGCTATCATTTATGCCTTTAATGGTGGTAGTTTTAATGATGCAACAATTGCTGAAGGGCCTTCTGAAGCTCTGATGTGGGAGGACATGGCTACTTCTGATCAGACACGTGTTTGTGTGAAACAAGTGAGGCAAGAGGTGGCAGATGAGTGGGATGAGAGCATGCCATTACCAGGGGAcatcattgaaggattttctgAGCACGGTGCTGATGATTCCTTTTTACCGGTCAAGGCCAGTTCAGAGCTTAGTTCTCAGCTTGGCAAGATTAACCCGCTGTGGAACTCATATGGATAA	1506	0.4303	MDNNSGFVPYGTDPFDSPLLQNFIEMDPALVYLSNDGPSALPQQQNDPVGVQQSNVSFTEPTIQNQSMRTNNNFSIGGEFGNFEAGPSRRNSKEPIIQDQFMHGNNDFFNGGGIGNFGPGPWTQGNQSEQTYENMGPQNYQEVISLPFWPPLPRPFFCSCCQVLRQIIHTNGSTFEKLEIHGRIGLISHAIIQIQSITPVGPSSDSHQMIDFYYRNAEQIKSFLERYCEQQNELGYVIVEDPLSAYYEALCAGLDWAEDLSDEDDDFIPPNDMEPESEPEPENGTASTSRPNRGIQIERVARMTLSDLSGVFHIPIKAAAKQLDICPSAVKKICRRADLKRWPQRKVKSLMKRVAVLKSGLDSPDPGTRARTRAEIGRLQQEIIEWLTCATDWLYKRPRCFLPVAIIYAFNGGSFNDATIAEGPSEALMWEDMATSDQTRVCVKQVRQEVADEWDESMPLPGDIIEGFSEHGADDSFLPVKASSELSSQLGKINPLWNSYG	501

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu1g3599	501	MobiDBLite	consensus disorder prediction	263	279	-	-
	Ssu1g3599	501	ProSiteProfiles	RWP-RK domain profile.	284	371	IPR003035	-
	Ssu1g3599	501	MobiDBLite	consensus disorder prediction	263	293	-	-
	Ssu1g3599	501	Pfam	RWP-RK domain	303	350	IPR003035	-
	Ssu1g3599	501	PANTHER	PROTEIN RKD4	38	385	IPR044607	GO:0003700
	Ssu1g3599	501	PANTHER	RWP-RK DOMAIN PROTEIN	38	385	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu1g3599	Ssu-Chr1	91410569	91415739	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu1g3599	264	363	NLP Transcription Factor Family	AT1G64530	33.019	1.58e-09	58.5

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	RWP-RK	Ssu1g3599		RWP-RK	1.4e-19	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu1g3599	-		-	ccaj:109790026	349.362