Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3594 ATGTGCATTGCAAGTAGCTTGGTGGCTAGTTTAACTGTTGGCAAACTGAAAAGGATGAAGATTTGGGGTTTGGGGTTTTGGAGGTGGTGTGTGCTTGTGATGGTGACCTTCTGTGGCATGTTGGTTACCAGATGGTTCATGCACATTGTTGTTTTCTTGATTGAGACCAACTTTTTGTTGAGGAAAAAGGTGCTTTATTTTGTCCATGGACTGAAGAAGTGTGTCCAggtcttcatttggcttggttTGGTTCTTCTCACATGGGTGCTGTTGATTAACCGCGGGGTCGACCGATCTGAATTGGCCACAAAATTTTTGAATGGGGTAACGTGGACTCTTGTTTCCCTCCTCATTGGAGCATTCCTGTGGTTCATGAAGACGTTGTTGCTAAAGATCTTGGCATCGAATTTCCATGTTAAATCTTTCTTTGATCGAATTCAAGAATCGCTCTTCCATCAGTACATTCTGCAGACTCTCTCTGGGCCTCCACTTGTAGAAGAGGCTGAGAAGGTCGGGGCATCGCACAGTGTTGGTCATTTTAGTTTCAGAAGTACAGATGGTAGAGGCGGCACAAAGAAAGAGATTATTGATATCGCAAAGCTTCACCAGATGAAACAAGAGAAAGTTTCTGCGTGGACTATGAAGGTTTTGGTAGATGCAATGATAAATTCAGGGCTGTCCACAATCTCTAGTGCACTAGATGAGAGGTTTGATGATGGAGAAAATGAACAAACTGATAAAGAGATTACCAATGAGATGGAAGCAACTGCTGCAGCCTATTACATTTTCAGGAATGTTGCTGCCCCTGGTTGCACGTACATTGATGAGGATGAACTTCGGAGGTTCATGATTAAGGAAGAAGTGCGAATGGTATATCCCCTACTGGCTGCAGCGGAAACGGGGCAGATTACCAGAAAGTCCTTAACAGACTGGTTGTTGAAGGTATATCAAGAACGCAAAGCATTGGCACATGCCTTAAATGACACCAAAACAGCTGTGAAGCAACTAAACAAGCTCGTGACAGGAATCCTAGTAGTGGTGACCATAATTGTGTGGCTTCTACTAATGGAGATTGCAACAACAAAAGTACTTGTATTCCTCTCATCACAACTAGTACTTGCAGCTTTCATGTTTGGAAACACATGCAAGAACATATTTGAAGCTATCATCTTTGTGTTTGTAATGCATCCATTTGATGTTGGTGATCGATGTGTTATTGATGGTGTTGAGCTATTGGTTGAAGAAATGAATATATTGACCACAGTCTTCTTGAAGCTTAATAATGAAAAGGTGTACTATCCAAACTCTGTCCTGGCCACAAAACCGATTAGCAATTATTACAGAAGCCCAGATATGGGTGACAGTGTTGAGTTCTCGATTGATTTTACGACACCAGCTGAGAAGATTGGGGcactgaaagaaaaaataaagagGTACCTGGAGAGAAATCCACAATACTGGCATCCCAATCATGGGTTAGTAGTGAAGGAGATTGAAAATGTAAACAAGATTAAGATGGGTGTCTATGTTACCCACACAATGAACTTTCAAGAGTTTGGGGAAAAAAACAAGCGAAGAACTGAACTGGTGatggaaataaagaaaatatttgaagagCTCAATATCAGATACAACCTTCTTCCTCAAGGCGTTCTTCTCAGACATATGGAACCAGACACTAGTGTACTCAATACATGGCCTTAG 1704 0.4043 MCIASSLVASLTVGKLKRMKIWGLGFWRWCVLVMVTFCGMLVTRWFMHIVVFLIETNFLLRKKVLYFVHGLKKCVQVFIWLGLVLLTWVLLINRGVDRSELATKFLNGVTWTLVSLLIGAFLWFMKTLLLKILASNFHVKSFFDRIQESLFHQYILQTLSGPPLVEEAEKVGASHSVGHFSFRSTDGRGGTKKEIIDIAKLHQMKQEKVSAWTMKVLVDAMINSGLSTISSALDERFDDGENEQTDKEITNEMEATAAAYYIFRNVAAPGCTYIDEDELRRFMIKEEVRMVYPLLAAAETGQITRKSLTDWLLKVYQERKALAHALNDTKTAVKQLNKLVTGILVVVTIIVWLLLMEIATTKVLVFLSSQLVLAAFMFGNTCKNIFEAIIFVFVMHPFDVGDRCVIDGVELLVEEMNILTTVFLKLNNEKVYYPNSVLATKPISNYYRSPDMGDSVEFSIDFTTPAEKIGALKEKIKRYLERNPQYWHPNHGLVVKEIENVNKIKMGVYVTHTMNFQEFGEKNKRRTELVMEIKKIFEELNIRYNLLPQGVLLRHMEPDTSVLNTWP 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3594 567 PIRSF Memb_At2g17000 1 567 IPR016688 -
Ssu1g3594 567 SUPERFAMILY Sm-like ribonucleoproteins 387 446 IPR010920 -
Ssu1g3594 567 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 2 553 IPR016688 -
Ssu1g3594 567 Pfam Mechanosensitive ion channel 338 543 IPR006685 GO:0016020|GO:0055085
Ssu1g3594 567 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 9 2 553 - -
Ssu1g3594 567 Gene3D - 397 446 IPR023408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3594 Ssu-Chr1 91312675 91315197 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3594 1 553 Mechanosensitive Ion Channel Family AT5G12080 66.126 0.0 768
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3594 1 91312675 91315197 Ssu1g3594 1 91312675 91315197 ECH