Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3581 ATGGCGTTTCGGTTCGGACTCCTCCTTCCGGTTTTTCTCCTTTGTTTGGATTCAATCAATTCGGTGAATTCACACGACGTTGAAGGAGCAGCGTTGTTGGAGATAAAGAAGTCACTGAGGGATGTGCATAACGTTCTGTATGACTGGGCAGACTCACCGTCATCGGATTATTGTGTCTGGAGAGGGGTTACATGTGATAATGTCACTTTCAATGTGGTTGCGCTCAATCTTTCAGGGTTGAATCTTGAGGGCGAAATTTCACCTGCAATAGGGAGCCTGAAGAGCTTGGTCTCTATTGATCTCAAGGAAAACCGTTTGTCTGGCCAGATACCTGACGAGCTTGGTGACTGTATCTCTTTGAAAAGCATAGACTTGTCGTTTAATGACATTCGGGGAGATATACCGTTTTCAATTTCGAAGATGAAACAGCTGGAAAATCTaattttgaaaaataatcagCTAATTGGACCAATTCCTTCAACTCTCTCTCAGATTCCTAACTTGAAGATTCTAGACCTGGCACAGAATAATCTTAGCGGGGAGATACCAAGACTTGTATACTGGAATGAAGTTTTGCAATATTTTGGCTTGCGAGGTAACAATTTGGTGGGTTCACTTTCTCCAGACATGTGCCAGTTAACTGGATTGTGGTATTTTGACGTGAGAAACAATAGCTTGACGGGCAGTATTCCTGATAACATAGGCAATTGTACTACTTTCCAGGTCTTGGATTTATCCTACAACAAGCTAACCGGAGAGATACCTTTCAATATTGGATTTCTGCAAGTAGCAACTCTGTCACTGCAAGGAAATAAACTCTCAGGGCATATTCCATCAGTGATTGGTCTGATGCAAGCGCTTACTGTCTTAGATTTGAGTTGTAACATATTAAGTGGGCCAATCCCTCCTATCTTGGGAAATTTGACCTACACGGAGAAATTGTATTTGCATGGAAACAAGCTGACTGGCCTCATCCCCCCAGAGCTGGGAAATATGACAAGGCTTCACTATTTGGAATTGAATGATAACCATCTAAGTGGACGTATCCCACCTGAGCTTGGAAAGCTTACTGATCTGTTTGACTTAAATGTTGCCAACAACAACCTTGAAGGTCCAATTCCTGATAATCTTAGCTCGTGTAAAAACCTCAACAGCCTCAATGTGCATGGGAATAAGCTGAGGGGAACAGTCCCCTCAGCTTTTCAGAGCTTGGAGAGTATGACATATCTGAATCTTTCTTCAAACAATCTCCAAGGCTCCATTCCAATTGAAATTTCACGGATTGGTAATTTGGATACACTggatatatcaaataataatataattggtTCCATTCCTTCTTCCATTGGTGACTTGGAACATCTTCTGAAGTTGAATCTGAGCAGAAATCATTTAACAGGGTTTATTCCAGCAGAATTTGGTAATCTAAGAAGTGTCATGGATATTGATCTTTCAAATAATCAACTCTCTGGCTTGATTCCTGAGGAACTTAGTCAGCTTCAGAACATGATATCCTTGAGACTAGAAAAGAACAAATTATCTGGGGATGTGTCTTCGCTTGTAAATTGCCTTAGTCTTTCTCTGCTTAATGTCTCTTATAACAATTTAGTTGGTGTTATTCCCACAAGCAACAATTTTTCCAGGTTTTCCCCTGACAGTTTCATTGGGAACCCTGGTCTTTGTGGCTATTGGCTGGATTCATCTTGCCACGGGTCTCACCCTACAGAGCGAGTTACCTTGTCTAAGGCAGCTATCCTAGGAATTGCTCTAGGCGCCCTTgtgattatttttatgatattgcTAGCAGCTTGCCGACCACACAATCCAGCTCCTTTCTCTGATGGATCTTTTGACAAACCAGTGAGTTACTCACCTCCAAAGCTAGTGATTCTTCACATGAATATGGCACTTCATGTGTATGATGATATCATGAGGATGACTGAAAACCTAAGTGAGAAGTATATAATTGGGTATGGTGCATCAAGTACAGTTTATAAATGTGTTCTTAAGAATTGCAAGCCAGTGGCTATCAAGAAGCTCTATTCCCACTATCCGCAATGCTTGAAAGAGTTTGAGACTGAGCTTGAGACAGTTGGCAGCATTAAGCACAGAAATCTGGTCAGCCTCCAAGGCTACTCTTTGTCTCCATATGGAAACCTTCTCTTTTATGACTACATGGAAAATGGCAGTCTATGGGATCTTCTACATGGACCTACCAAGAAGAAAAAGCTTGATTGGGATCTTCGTCTAAAAATAGCACTTGGATCAGCCCAAGGGCTTGCTTATCTACACCATGATTGCAGTCCCCGTATCATTCACAGGGATGTGAAATCGtccaatattttattagacaagGACTTTGAGCCCCATCTCACCGATTTTGGCATTGCAAAAAGTCTATGCCCCTCTAAGTCCCACACTTCAACTTACATTATGGGCACAATTGGCTATATAGACCCCGAGTATGCTAGAACTTCCCGGCTCACTGAGAAGTCTGATGTGTATAGCTATGGTATCGTATTACTTGAGCTGCTAACTGGGAGGAAAGCTGTTGACAACGAATTAAACCTTCATCATCTGATTTTGTCCAAGACAGCTAATGATGCCGTAATGGAAACTGTTGATCCAGATATTACTGCCACATGCAAGGACATGGGAGCAGTAAAAAAGGTCTTCCAGCTTGCTCTTTTATGCACAAAGAAGCAACCAGTTGATAGGCCTACAATGCATGAGGTGACACGCGTGCTGGGAAGTCTTGTGCCATCCATCACTCCACCAAAACAATCGGTCCCAGCACAAGTACTAGTACTACTACCTGATTCACAGCCATCTGTTAAAATGCAATGCTACAAGGATGAATATGCAAATCTTAAAACTCCACACTTGGTGAACTGTCCATCAATGAGCACCTCTGATGCCCAACTCTTCctcaaatttggagaagtaaTATCTCAAAACAGTGagtga 2967 0.4095 MAFRFGLLLPVFLLCLDSINSVNSHDVEGAALLEIKKSLRDVHNVLYDWADSPSSDYCVWRGVTCDNVTFNVVALNLSGLNLEGEISPAIGSLKSLVSIDLKENRLSGQIPDELGDCISLKSIDLSFNDIRGDIPFSISKMKQLENLILKNNQLIGPIPSTLSQIPNLKILDLAQNNLSGEIPRLVYWNEVLQYFGLRGNNLVGSLSPDMCQLTGLWYFDVRNNSLTGSIPDNIGNCTTFQVLDLSYNKLTGEIPFNIGFLQVATLSLQGNKLSGHIPSVIGLMQALTVLDLSCNILSGPIPPILGNLTYTEKLYLHGNKLTGLIPPELGNMTRLHYLELNDNHLSGRIPPELGKLTDLFDLNVANNNLEGPIPDNLSSCKNLNSLNVHGNKLRGTVPSAFQSLESMTYLNLSSNNLQGSIPIEISRIGNLDTLDISNNNIIGSIPSSIGDLEHLLKLNLSRNHLTGFIPAEFGNLRSVMDIDLSNNQLSGLIPEELSQLQNMISLRLEKNKLSGDVSSLVNCLSLSLLNVSYNNLVGVIPTSNNFSRFSPDSFIGNPGLCGYWLDSSCHGSHPTERVTLSKAAILGIALGALVIIFMILLAACRPHNPAPFSDGSFDKPVSYSPPKLVILHMNMALHVYDDIMRMTENLSEKYIIGYGASSTVYKCVLKNCKPVAIKKLYSHYPQCLKEFETELETVGSIKHRNLVSLQGYSLSPYGNLLFYDYMENGSLWDLLHGPTKKKKLDWDLRLKIALGSAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEPHLTDFGIAKSLCPSKSHTSTYIMGTIGYIDPEYARTSRLTEKSDVYSYGIVLLELLTGRKAVDNELNLHHLILSKTANDAVMETVDPDITATCKDMGAVKKVFQLALLCTKKQPVDRPTMHEVTRVLGSLVPSITPPKQSVPAQVLVLLPDSQPSVKMQCYKDEYANLKTPHLVNCPSMSTSDAQLFLKFGEVISQNSE 988
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3581 988 ProSitePatterns Serine/Threonine protein kinases active-site signature. 771 783 IPR008271 GO:0004672|GO:0006468
Ssu1g3581 988 Pfam Protein kinase domain 653 913 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g3581 988 ProSiteProfiles Leucine-rich repeat profile. 167 189 IPR001611 GO:0005515
Ssu1g3581 988 Gene3D Ribonuclease Inhibitor 189 262 IPR032675 -
Ssu1g3581 988 SUPERFAMILY L domain-like 264 549 - -
Ssu1g3581 988 Gene3D Transferase(Phosphotransferase) domain 1 726 926 - -
Ssu1g3581 988 Pfam Leucine rich repeat N-terminal domain 27 66 IPR013210 -
Ssu1g3581 988 Pfam Leucine rich repeat 382 441 IPR001611 GO:0005515
Ssu1g3581 988 SMART LRR_typ_2 404 428 IPR003591 -
Ssu1g3581 988 SMART LRR_typ_2 213 237 IPR003591 -
Ssu1g3581 988 SMART LRR_typ_2 332 356 IPR003591 -
Ssu1g3581 988 SMART LRR_typ_2 452 475 IPR003591 -
Ssu1g3581 988 SMART LRR_typ_2 380 403 IPR003591 -
Ssu1g3581 988 SMART LRR_typ_2 165 189 IPR003591 -
Ssu1g3581 988 SMART LRR_typ_2 476 499 IPR003591 -
Ssu1g3581 988 SMART LRR_typ_2 93 117 IPR003591 -
Ssu1g3581 988 SMART serkin_6 650 916 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g3581 988 ProSitePatterns Protein kinases ATP-binding region signature. 656 679 IPR017441 GO:0005524
Ssu1g3581 988 SUPERFAMILY Protein kinase-like (PK-like) 627 916 IPR011009 -
Ssu1g3581 988 Gene3D Phosphorylase Kinase; domain 1 623 725 - -
Ssu1g3581 988 SUPERFAMILY L domain-like 52 303 - -
Ssu1g3581 988 Pfam Leucine Rich Repeat 455 476 IPR001611 GO:0005515
Ssu1g3581 988 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE ERECTA 7 975 - -
Ssu1g3581 988 ProSiteProfiles Protein kinase domain profile. 650 923 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g3581 988 Gene3D Ribonuclease Inhibitor 25 188 IPR032675 -
Ssu1g3581 988 Gene3D Ribonuclease Inhibitor 263 572 IPR032675 -
Ssu1g3581 988 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 7 975 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3581 Ssu-Chr1 91095025 91102296 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3581 95 987 Receptor kinase-like Gene Family AT5G07180 64.877 0.0 1147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIb Ssu1g3581 Pkinase 2.9e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3581 K20718 - gmx:100804875 1779.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3581 1 91095025 91102296 Ssu1g3581 1 91095025 91102296 ECH