Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3580 ATGAATCTGCGCCAGGGCACCAAGGTTTGGGTCCACGACAGGGATTTCGCTTGGGTCCCTGCTGAAGTTCTCGAATATTCGGGAAAGCAAGTTCGCGTTGCCACCGCTTCTGGCAAGAAGGTTCTTGCTCTTCCGGAGAACGTGTTTCCGCGTGATGCGGATGAAGAGGAGCATGGAGGAGTCGAAGATATGACGAGGTTGGCTTACTTGAATGAGCCAGGGGTGTTGTACAATCTCCGGAGAAGATATGCGCTGAATGATATTTATACATATACAGGGAGCATTTTAATAGCTGTCAATCCATTCACTAAGCTTCCTCATCTGTATAATATCCATATGATGGAGCAGTATAAGGGAGCTCCGTTTGGTGAGCTTTGTCCACATGTATTTGCTGTTGCCGATGCATCTTATAGGGCAATGATGAATGGAGGTCAAAGCCAATCTATCTTGGTCAGCGGTGAAAGTGGTGCTGGGAAAACTGAGACAACAAAATTGATTATGCAATATCTTACCTTTGTTGGTGGGCGTGCTGCTGGTGATGATAGAACAGTTGAACAACAAGTTCTTGAATCAAATCCACTTTTAGAGGCATTTGGCAATGCAAGGACTGTCAGGAATGACAATTCAAGCCGTTTTGGGAAGtttgttgaaattcaatttgattcaaatggTAGAATATCTGGTGCTGCAATTAGAACTTACTTACTGGAAAGATCACGAGTAGTGCAGATAACAGATCCAGAAAGAAATTATCACTGCTTTTATCAATTGTGTGCATCTGAAAGGGATGTAGAGAAGTATAAGTTGGGACATCCAAGCCACTTCCACTATTTGAATCAAAGCAAAGTCTATGAATTAGAAGGCATAAGCAGTGCTGAAGAATACATAAAGACGAGGAGAGCAATGGATATTGTTGGCATAAGTCATGAGGATCAGGAAGCCATATTTTGCACCTTAGCTGCAATTTTACATTTGGGAAACATTGAATTTTCTCCTGGAAAAGAGCATGACTCGTCAGTAATAAAAGATGAGAAATCAAGATTTCATTTGCAGATGGCTGCTAATCTTTTCAGGTGTGATTTGAACCTATTACTAGCAACATTATGTACCCGTTCAATTCAAACCCGAGAAGGAAATATTGTGAAAGCTCTTGATTGTAATGCTGCTGTTGCTGGCCGGGATGCTTTGGCAAAAACTGTCTATGCTCGTTTATTTGATTGGCTTGTTGATAAGATCAATAGTTCTGTCGGGCAAGATATCAATTCCCAGATGCAAATTGGAGTTTTGGATATATATGGTTTTGAGTGTTTTAAGGATAATAGTTTTGAGCAATTCTGCATCAATTTTGCTAATGAAAAGCTTCAGCAACATTTTAATCAGCATGTTTTCAAGATGGAGCAGGAGGAATACAGCAAAGAGGAAATTAACTGGAGTTACATTGAATTTATTGACAACCAAGATGTTTTAGATTTGATTGAAAAGAAACCAATTGGTATCGTTGCTCTGTTAGATGAAGCTTGCATGTTTCCAAAATCAACGCATGAAACATTCTCAACCAAGTTGTTTAAGCACTTCCTGTCACACCCTAGgttagaaaaggagaagtttTCAGAAACAGATTTTACTGTTTCTCATTATGCTGGAAAGGTCACTTACCATACAGACTCCTTCTTAGACAAAAATCGTGATTATGTAGTCGTAGAACATTGTAATCTATTATCTTCTTCAAAATGCCCCTTTGTTTCGGCTCTTTTTCCTTTGCTAACAGAGGAATCTTCAAGGTCATCCTACAAGTTTTCTTCTGTGGCTTCCAGATTTAAGCAACAACTTCAAGCACTCATGGAAACACTTAACACAACAGAGCCTCATTACATTCGATGTGTCAAGCCAAATTCTTTGAATCGACCACAAAAGTTTGAGAATACTAGTGTCATACACCAATTACGCTGTGGGGGCGTCTTTGAGGCTGTTCGAATAAGTCTGGCAGGTTACCCCACTCGAAGGATTTACTCAGAGTTTGTAGATCGCTTTGGATTAATAGCTCCCGAATTTATGGATGGAAGCTATGATGATAAAGCTGTAACTCTGAAAATATTGCAAAAGCTAAAGCTTGAGAATTTTCAGTTGGGTAGCACCAAAGTGTTTCTCAGGGCTGGTCAAATTTGCATTTTAGACTCTAGGCGTGCGGAAGTTTTGGACAATGCTGCAAAGTGTATTCAGTGTCGACTGCGAACATTTATTGCACACAGGGATTTCATGTCAATCCGAGCTGCTGCACTTTCTCTTCAAGCATGCTGCAGGGGATGCATTGTCCGAAAGATATATGCTTCTAAACGGGAGATGGCAGCAGCTATCTCCATTCAGAAATATATCCGTATGTGTCTGATGAGGCATGCTTATCTGAAATTATATTCTTCTGCTATTATTGTACAATCCAATGTTCGTGGTTGCACAACTCGTCAAAGATTCTTGCATAGAAAAGAACACAAAGCTGCCACTTATATTCAGGCCTATTGGAGGATGTGCAAGGTTCGGTCTGCCTTCCTACAGCATCAAAATTCAATTGTAGCAATACAATGCCTTTGGCGGTGTAGACAAGCAAAAAGAGAGCTTCGCAGGCTTAAACAAgaGGCTAATGAAGCTGGGGCCTTGCGTTTAGCTAAGAATAAACTCGAGAAACAATTGGAAGAGCTTACATGGCGTTTGCaccttgagaaaaaaataaggGTTTCTAATGAAGAGGCTAAGCATGTTGAGATTTCCAAACTACAGAAGATGTTAGATGCTCTGAATCTTGAATTAGATGCAGCTAAACTGGAAACAATTAATGAGTGCAACAAAAATGCAGTTTTGCAAAACCAGTTGCAATTGTCAGTAAAGGAAAAATCCGCTTTAGAAAGAGAGCTAGTTGCAATGGATGAAGTGCGAAAGGAAAATGCTTTATTAAAGGGTTCATTGAATGCTTTTGAAAAGAAGAGAACAGCTTTGGAGCTTGAACTTGTGAATGCTCGAAAAGACCATGATGAAACCATTAAGAAAATGAGGGAGTTTGAACATAAGTGTTCTCAACTTGGGCAAAATGTGAAAAGtcTTGAGGAAAAACTATTGAGTTTAGAGGATGAAAATCATGTGCTTCGTCAGAAAGCATTAAGTGTGTCTCCCAAGAGTAACCATCAAGGTTTCACAAAGTCATTGTCAGAAAAACACTCAAGTGCAATAGCCCCCCGCACCGAGCAAAAGCCAACATTTGAATCACCCACACCCACAAAACTTATTGCCCCTTTTACACTTGGCTTGTCAGACTCTCGTCGATCAAAATTAACAGCAGAGAGGCACCAGGATAACTATGAACTCCTCTCTAGGTGTATCAAAGAGGATTTGGGGTTCAAAAATGGTAAACCTCTGGCAGCTAGTATCATATACAAATGTCTTCATCATTGGCATGCCTTTGAATCTGAGCGCACAGCCATATTTGATTACATAGTTGATGGAATTAATGATATCCTAAAGGTTAGAGACGATGATATTGTCTTGCCATATTGGCTGTCCAATACTTCTGCACTTCTATGCCTCTTACAAAGGAACTTGCGTTCAAATGGCTTTTTAACAGCCACTGCTCAACGTTATGCCAAATCATCTGGCTTGACCACCCGAATAGGGCATGGGCTTAGGTCTCCATTGAAGCTTATTGGATATGATGATGGTATGTCACATCTGGAGGCAAGATATCCAGCTATTCTTTTTAAACAACAACTAACTGCTTGTGTAGAGAAGATTTTTGGCCTTATACGcgataatttgaaaaaagagcTTTCTCCACTTCTGGGATCATGTATTCAGGCACCTAAAACAGGACGAATGCAAGGTGGAAAATCATCTAGATCTCCTGGTGGGCTTCCTCAACAATCACCTGTTGGTCAATGGGACAGCATCATCAAATTTTTGGATTCACTCATGAGCTGCTTATGTGCAAATCATGTACCATCCTTCTTCATCCGCAAGCTAGTTACTCAGGTTTTTTCCTTCATCAATATTACACTCTTCAATAGTCTTCTGTTGCGGCGTGAATGTTGTACTTTCTCAAATGGTGAATATGTGAAGTCTGGTCTTGCAGAACTGGAGAAATGGATAGCTAATGCAAATGAGGAGTATGCAGGAACATCCTGGCATGAGTTGAATTATATAAGACAAGCTGTTGGATTTCTGGTAATACATCAGAAGAGGAAAAAATCTTTGGAAGAAATCCGGCAGGATCTTTGTCCGGCATTAACTGTGAGGCAAATTTATCGAATCAGTACTATGTACTGGGATGACAAGTATGGAACCCAGAGTGTGTCCAACGAGGTAGTTGGTGAAATGAGGGAAATTGTGAGCAAGGACAATCACAGTTTGGCGTCTAATTCATTTTTGTTGGATGATGATATGAGCATTCCTTTTTCTGCTGAAGACATAGATATGGCAATGCCTGCTATAAATGCTGCTGATATTGATCTCCCAGCATTTTTGTGTGAATATCCTTGTGCCCAGTTTCTTATTTTACATGAGAAGTAA 4551 0.396 MNLRQGTKVWVHDRDFAWVPAEVLEYSGKQVRVATASGKKVLALPENVFPRDADEEEHGGVEDMTRLAYLNEPGVLYNLRRRYALNDIYTYTGSILIAVNPFTKLPHLYNIHMMEQYKGAPFGELCPHVFAVADASYRAMMNGGQSQSILVSGESGAGKTETTKLIMQYLTFVGGRAAGDDRTVEQQVLESNPLLEAFGNARTVRNDNSSRFGKFVEIQFDSNGRISGAAIRTYLLERSRVVQITDPERNYHCFYQLCASERDVEKYKLGHPSHFHYLNQSKVYELEGISSAEEYIKTRRAMDIVGISHEDQEAIFCTLAAILHLGNIEFSPGKEHDSSVIKDEKSRFHLQMAANLFRCDLNLLLATLCTRSIQTREGNIVKALDCNAAVAGRDALAKTVYARLFDWLVDKINSSVGQDINSQMQIGVLDIYGFECFKDNSFEQFCINFANEKLQQHFNQHVFKMEQEEYSKEEINWSYIEFIDNQDVLDLIEKKPIGIVALLDEACMFPKSTHETFSTKLFKHFLSHPRLEKEKFSETDFTVSHYAGKVTYHTDSFLDKNRDYVVVEHCNLLSSSKCPFVSALFPLLTEESSRSSYKFSSVASRFKQQLQALMETLNTTEPHYIRCVKPNSLNRPQKFENTSVIHQLRCGGVFEAVRISLAGYPTRRIYSEFVDRFGLIAPEFMDGSYDDKAVTLKILQKLKLENFQLGSTKVFLRAGQICILDSRRAEVLDNAAKCIQCRLRTFIAHRDFMSIRAAALSLQACCRGCIVRKIYASKREMAAAISIQKYIRMCLMRHAYLKLYSSAIIVQSNVRGCTTRQRFLHRKEHKAATYIQAYWRMCKVRSAFLQHQNSIVAIQCLWRCRQAKRELRRLKQEANEAGALRLAKNKLEKQLEELTWRLHLEKKIRVSNEEAKHVEISKLQKMLDALNLELDAAKLETINECNKNAVLQNQLQLSVKEKSALERELVAMDEVRKENALLKGSLNAFEKKRTALELELVNARKDHDETIKKMREFEHKCSQLGQNVKSLEEKLLSLEDENHVLRQKALSVSPKSNHQGFTKSLSEKHSSAIAPRTEQKPTFESPTPTKLIAPFTLGLSDSRRSKLTAERHQDNYELLSRCIKEDLGFKNGKPLAASIIYKCLHHWHAFESERTAIFDYIVDGINDILKVRDDDIVLPYWLSNTSALLCLLQRNLRSNGFLTATAQRYAKSSGLTTRIGHGLRSPLKLIGYDDGMSHLEARYPAILFKQQLTACVEKIFGLIRDNLKKELSPLLGSCIQAPKTGRMQGGKSSRSPGGLPQQSPVGQWDSIIKFLDSLMSCLCANHVPSFFIRKLVTQVFSFINITLFNSLLLRRECCTFSNGEYVKSGLAELEKWIANANEEYAGTSWHELNYIRQAVGFLVIHQKRKKSLEEIRQDLCPALTVRQIYRISTMYWDDKYGTQSVSNEVVGEMREIVSKDNHSLASNSFLLDDDMSIPFSAEDIDMAMPAINAADIDLPAFLCEYPCAQFLILHEK 1516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3580 1516 SMART MYSc_2a 53 730 IPR001609 GO:0003774|GO:0005524|GO:0016459
Ssu1g3580 1516 MobiDBLite consensus disorder prediction 1050 1086 - -
Ssu1g3580 1516 Gene3D Myosin VI head, motor domain, U50 subdomain 308 598 - -
Ssu1g3580 1516 MobiDBLite consensus disorder prediction 1286 1303 - -
Ssu1g3580 1516 Gene3D - 249 306 - -
Ssu1g3580 1516 ProSiteProfiles IQ motif profile. 755 784 IPR000048 GO:0005515
Ssu1g3580 1516 PANTHER PROTEIN OPAQUE1-LIKE 4 1513 - -
Ssu1g3580 1516 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 32 779 IPR027417 -
Ssu1g3580 1516 Gene3D - 830 879 - -
Ssu1g3580 1516 Gene3D - 782 829 - -
Ssu1g3580 1516 Gene3D - 731 781 - -
Ssu1g3580 1516 Coils Coil 920 940 - -
Ssu1g3580 1516 Coils Coil 972 1048 - -
Ssu1g3580 1516 ProSiteProfiles Dilute domain profile. 1159 1459 IPR002710 -
Ssu1g3580 1516 Coils Coil 864 908 - -
Ssu1g3580 1516 CDD MYSc_Myo11 73 717 IPR036018 -
Ssu1g3580 1516 Pfam IQ calmodulin-binding motif 805 823 IPR000048 GO:0005515
Ssu1g3580 1516 Pfam IQ calmodulin-binding motif 756 775 IPR000048 GO:0005515
Ssu1g3580 1516 Pfam IQ calmodulin-binding motif 782 800 IPR000048 GO:0005515
Ssu1g3580 1516 Pfam IQ calmodulin-binding motif 829 848 IPR000048 GO:0005515
Ssu1g3580 1516 ProSiteProfiles IQ motif profile. 803 832 IPR000048 GO:0005515
Ssu1g3580 1516 Gene3D Kinesin motor domain 62 659 IPR036961 -
Ssu1g3580 1516 MobiDBLite consensus disorder prediction 1050 1089 - -
Ssu1g3580 1516 ProSiteProfiles IQ motif profile. 851 880 IPR000048 GO:0005515
Ssu1g3580 1516 ProSiteProfiles Myosin motor domain profile. 59 729 IPR001609 GO:0003774|GO:0005524|GO:0016459
Ssu1g3580 1516 PRINTS Myosin heavy chain signature 146 171 IPR001609 GO:0003774|GO:0005524|GO:0016459
Ssu1g3580 1516 PRINTS Myosin heavy chain signature 193 220 IPR001609 GO:0003774|GO:0005524|GO:0016459
Ssu1g3580 1516 PRINTS Myosin heavy chain signature 478 506 IPR001609 GO:0003774|GO:0005524|GO:0016459
Ssu1g3580 1516 PRINTS Myosin heavy chain signature 425 453 IPR001609 GO:0003774|GO:0005524|GO:0016459
Ssu1g3580 1516 PRINTS Myosin heavy chain signature 89 108 IPR001609 GO:0003774|GO:0005524|GO:0016459
Ssu1g3580 1516 CDD MyosinXI_CBD 1110 1482 IPR037975 GO:0007015
Ssu1g3580 1516 PANTHER MYOSIN 4 1513 - -
Ssu1g3580 1516 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 781 878 IPR027417 -
Ssu1g3580 1516 Gene3D - 664 730 - -
Ssu1g3580 1516 Coils Coil 948 968 - -
Ssu1g3580 1516 Pfam Myosin head (motor domain) 61 717 IPR001609 GO:0003774|GO:0005524|GO:0016459
Ssu1g3580 1516 ProSiteProfiles IQ motif profile. 828 857 IPR000048 GO:0005515
Ssu1g3580 1516 Gene3D - 435 620 - -
Ssu1g3580 1516 MobiDBLite consensus disorder prediction 1282 1303 - -
Ssu1g3580 1516 SMART DIL_2 1334 1441 IPR002710 -
Ssu1g3580 1516 SMART iq_5 850 872 IPR000048 GO:0005515
Ssu1g3580 1516 SMART iq_5 802 824 IPR000048 GO:0005515
Ssu1g3580 1516 SMART iq_5 731 753 IPR000048 GO:0005515
Ssu1g3580 1516 SMART iq_5 779 801 IPR000048 GO:0005515
Ssu1g3580 1516 SMART iq_5 827 849 IPR000048 GO:0005515
Ssu1g3580 1516 SMART iq_5 754 776 IPR000048 GO:0005515
Ssu1g3580 1516 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 4 53 IPR004009 GO:0003774|GO:0005524|GO:0016459
Ssu1g3580 1516 Pfam DIL domain 1335 1438 IPR002710 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3580 Ssu-Chr1 91060636 91088315 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3580 1 1512 Myosins gene family AT4G33200 73.364 0.0 2278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3580 K10357 - gmx:100796413 2808.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3580 1 91060636 91088315 Ssu5g0432 5 8898500 8940196 PCT