Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3574 ATGATGCACATGACCTTTTATTGGAGCAAGAAGGTGACCCTTCTCATCGATTCATGGAAGACCAACGATTGGACGGATTATCTCCTCACTCTTCTCGCATGTCTCGTCGTTTCAGTTTTCTACCAGTTTCTCGAGAATCGCCGTATTAGCCTGAGGCTGATCGGCGCCGGGAAGCCCTTCCCGGCGGAGATCGAGACCCCTCTGTTGCGACGGAGTCTCGCCGGAAACGGTGCCAAGGTGGCTGTGAAGGTTGCCGGAGCGTTTCTGTTTGCGGTGAGCTCGGCGATCGGGTATTTGCTGATGTTGGCTGTTATGTCCTTCAACGGAGGGGTCTTTGTGGCCATCGTCGTGGGTCTCGCTCTTGGCTACTTCTTCTTCAGGAATGAGGGCGAAAATTCCCTTGTCGTTGACGCTTCTTGTGCTTGTGCTTGA 432 0.5347 MMHMTFYWSKKVTLLIDSWKTNDWTDYLLTLLACLVVSVFYQFLENRRISLRLIGAGKPFPAEIETPLLRRSLAGNGAKVAVKVAGAFLFAVSSAIGYLLMLAVMSFNGGVFVAIVVGLALGYFFFRNEGENSLVVDASCACA 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3574 143 Pfam Ctr copper transporter family 4 126 IPR007274 GO:0005375|GO:0016021|GO:0035434
Ssu1g3574 143 PANTHER SOLUTE CARRIER FAMILY 31 COPPER TRANSPORTERS 1 143 IPR007274 GO:0005375|GO:0016021|GO:0035434
Ssu1g3574 143 PANTHER CTR FAMILY COPPER TRANSPORTER 1 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3574 Ssu-Chr1 90972059 90972490 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3574 1 143 Inorganic Solute Cotransporters AT5G20650 51.333 2.52e-48 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3574 K14686 - gmx:100805457 249.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3574 1 90972059 90972490 Ssu1g3574 1 90972059 90972490 ECH
Ssu1g3574 1 90972059 90972490 Ssu5g0505 5 10852248 10852826 ECH
Ssu6g0581 6 9032210 9032656 Ssu1g3574 1 90972059 90972490 ECH
Ssu4g3119 4 79149019 79149495 Ssu1g3574 1 90972059 90972490 ECH