Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3569 ATGGATGATTCATCACACCAGAACCAGGACCAAAGTAAAAAACGAAAGCTCCAAAATGTTGATGATTCTCCATCTCTGGAATCTCCGGGTTCCAACATGAACCCCAGAAgGTATCAGACACAGGTGTTTGAAGTTGCAAAGAGAAGGAACACAATAGCAGTGTTGGATACAGGGTCTGGTAAGACCTTCATTGCTGTGATGCTTATGAAAGAGCAATTCAAGAATATAAAAGATCTTACAGATTTTCAAGTTGAGGAATACTACGGGGCTAAAGGAGTTGATACATGGAATTTGAAGACGTGGGAGAAGGCGATTAGTAACAATGATGTACTGGTTATGACACCCCAGATTCTTTTGAATGTCTTAAGAAAAGGATTCCTGCGTATAGAAATGATATGCTTGATGATTATTGATGAATGTCATAGAGCAATCGGCAACCATCCCTATGCAAGAATAATGAAGGAATTTTATCACCAAGCTAATGAAAAGCCAAAGATTTTTGGGATGACAGCTTCGCCAGTAAGTAAGAAAGGTGTTTCCTCTATGATGGATTGTGAGAATCAGATATCAGAACTTGAAAGCATCTTGGATTCTGAGAGATATACAGTTGAAGATCGGACAGAGATTGATCGATGTATCTCGTCTGCTAAAGAGAGTTGTACATTTTATGACCAAGCACGATCTTCTGCGTTGAGTTTGAAACCAAAGATTGAAGCCTTGTGGTTCAAGTGTGATGCATTGTTATCAGAAAATCAAAGTAACTACAAGGATGTGGACAATAAATTTAAGATGCTGTATCAGCGGATGTCCAATGAACTTGCAAAAATTTTGCATTGCCTTGAAGATCTTGGGATCCTATGTGCTTATGAGGCTGTTAAAATCTGTCATGAGAATTTCTCCAAAAGTGAAGGAGAGAGTGAAATTTACAGAAAAGGTTGTCTCCAGTGTATAACTGTTGTTGAagaagtaatcaaaataatcgAAGAATCCCTCCATCTTGCTGATAATAAGATTTTGGGGGTTGACTTTGATTATTCAAAGGCAGAAGATTTGGGATACATATCTCCAAAATTACTAGAACTTATTAAACTCTTCGAGTCATTTGGAGAATCTAGTCAGGTGTTGtgccttatttttgttgataGAATCATTACAGCTAAGGTGATCGAAAGATTCGCAAAGAAAGTTCCGCAGATTTCTCATTTCACGGTTTCCTATTTAACCGGAAACACTACATCGGTTGATGCTCTGGCTCCTAGGAGGCAGAAGGAGATATTGGATTCTTTCCGCTCTGGAAAGGTCAATCTATTATTTACCACTGATGTACTTGAGGAAGGAATTGATGTGCCAAACTGCTCTTGTGTGATACGTTTTGACCTCCCAAAGACAGTTCGTAGTTATGTCCAATCTCGCGGAAGATCTAGGCGGGCTAACTCCCAATTTGTATTGATGGGAAACTTGAAGCAAAGAAATCAACTCTTTGACATCATTAGGAGTGAGCGCTCCATGACTGATGCATCTATTAATAAAGGCCAGGAATCTAGTTTAAGGGTGTCTACGGTGGGGAAAACAAATGCATATTATGTGGAATCTACTGGAGCGTCTGTCACTTTAGATTCTAGTGCTAGTCTTATCGACCGATACTGTGCAAAGCTCCCACGAGATAAGTACTCCTGCGCAAAGCCAAGTTTTGAGTTTATGCCTGTGGAAGGGGGTTACCAATGCACATTAATATTACCACGTAATGCAGCTTTACAAAAAATAACTGGTCCTCCAGGAGGAGATATTCGTTTGGCAAGGTATCTTGCATGTTTCGAAGCTTGTAAGAAGCTGCATCAAATGGGCGCCTTAAATGAACATCTGGTTCCATTCACTAAAGATCCTTCAGAAGATGTCCATATTGGGAAAAACAAAGAATCAAGTTCTGGTGCAGGAACCACAGAAAGAAAGGAGTTACATGGAACAACCAACATTCGTGCATTAAGTGGTGCATGGGGAGACAAACTTGATGGAGCCAAATTTCATgcctataaatttgaattcgcGTGTAGTGTTGTTAGTGAAATATACTGCGGGTTTGTTCTTTTGATTGAGTCAAAGCTTGATGATGATGTGGGAAATGTAGAATTGGATCTTTATTTAGTCTCAAAGATCGTGAAAGCTTCTGTCTCTTCGTGTGGGCAAGTTGATTTGGATGCTAAACAGATGATGAAAGCAAAATGCTTCCATGAGCTTTTTTTCAATGGTTTGTTTGGAAGATTGGTTTTTAAGTCCAAATCAGCAGTAGGGGGAAGGGAATTTTTACTTCAGAAAGAGACAAAGTCATTGTGGAGCCCAAAACACTTATATTTGCTTCTACCACTTGAGAAATTGAATGATATCTGTGGGGGATCTTTGCAAATAAATTGGCGTGGAATCAATTCTTGTACTTCTGCTATTGAATTTTTGAGGAGAAATTTTCTTTGCTCGCTGGAGATTGTGATGATAACAGCACAATCACATCACCTCATGATACCAGTTCATCGGAGATGGAATGTAAAGGAACAAACAAGATTCACTTTGCTAATTGTGTGA 2574 0.385 MDDSSHQNQDQSKKRKLQNVDDSPSLESPGSNMNPRRYQTQVFEVAKRRNTIAVLDTGSGKTFIAVMLMKEQFKNIKDLTDFQVEEYYGAKGVDTWNLKTWEKAISNNDVLVMTPQILLNVLRKGFLRIEMICLMIIDECHRAIGNHPYARIMKEFYHQANEKPKIFGMTASPVSKKGVSSMMDCENQISELESILDSERYTVEDRTEIDRCISSAKESCTFYDQARSSALSLKPKIEALWFKCDALLSENQSNYKDVDNKFKMLYQRMSNELAKILHCLEDLGILCAYEAVKICHENFSKSEGESEIYRKGCLQCITVVEEVIKIIEESLHLADNKILGVDFDYSKAEDLGYISPKLLELIKLFESFGESSQVLCLIFVDRIITAKVIERFAKKVPQISHFTVSYLTGNTTSVDALAPRRQKEILDSFRSGKVNLLFTTDVLEEGIDVPNCSCVIRFDLPKTVRSYVQSRGRSRRANSQFVLMGNLKQRNQLFDIIRSERSMTDASINKGQESSLRVSTVGKTNAYYVESTGASVTLDSSASLIDRYCAKLPRDKYSCAKPSFEFMPVEGGYQCTLILPRNAALQKITGPPGGDIRLARYLACFEACKKLHQMGALNEHLVPFTKDPSEDVHIGKNKESSSGAGTTERKELHGTTNIRALSGAWGDKLDGAKFHAYKFEFACSVVSEIYCGFVLLIESKLDDDVGNVELDLYLVSKIVKASVSSCGQVDLDAKQMMKAKCFHELFFNGLFGRLVFKSKSAVGGREFLLQKETKSLWSPKHLYLLLPLEKLNDICGGSLQINWRGINSCTSAIEFLRRNFLCSLEIVMITAQSHHLMIPVHRRWNVKEQTRFTLLIV 857
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3569 857 MobiDBLite consensus disorder prediction 22 37 - -
Ssu1g3569 857 SMART ultradead3 31 204 IPR014001 -
Ssu1g3569 857 MobiDBLite consensus disorder prediction 1 37 - -
Ssu1g3569 857 CDD DEXHc_dicer 33 205 - -
Ssu1g3569 857 PANTHER DICER-RELATED 28 833 - -
Ssu1g3569 857 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 67 482 IPR027417 -
Ssu1g3569 857 CDD SF2_C_dicer 353 484 - -
Ssu1g3569 857 PANTHER ENDORIBONUCLEASE DICER HOMOLOG 3 28 833 - -
Ssu1g3569 857 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 541 631 IPR005034 GO:0016891
Ssu1g3569 857 Gene3D Dicer dimerisation domain 536 633 IPR038248 -
Ssu1g3569 857 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 357 512 IPR001650 -
Ssu1g3569 857 MobiDBLite consensus disorder prediction 1 21 - -
Ssu1g3569 857 Pfam Dicer dimerisation domain 541 627 - -
Ssu1g3569 857 Gene3D - 348 513 IPR027417 -
Ssu1g3569 857 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 42 191 IPR014001 -
Ssu1g3569 857 MobiDBLite consensus disorder prediction 630 651 - -
Ssu1g3569 857 Pfam Type III restriction enzyme, res subunit 34 173 IPR006935 GO:0003677|GO:0005524|GO:0016787
Ssu1g3569 857 Gene3D - 28 239 IPR027417 -
Ssu1g3569 857 SMART helicmild6 390 478 IPR001650 -
Ssu1g3569 857 Pfam Helicase conserved C-terminal domain 361 478 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3569 Ssu-Chr1 90865663 90875881 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3569 401 488 Eukaryotic Initiation Factors Gene Family AT3G19760 37.079 1.20e-08 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3569 K11592 - gmx:100806831 1345.87