Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3567 ATGAATTTCAACATTGATTCATCAGACCATAACCAAAGTAAAAAACGAAAGCTACCCGATGCTGATGATTCTCCAGCGCCGGAATTGTCGTGTTCCAATATGGACCCCAGaagGTATCAGTTAGAGGTGTTTGAAGTTGCAAGGAGAAGGAACACAATAGCTGTATTGGATACAGGGTCTGGTAAGACCTTGATTGCTGTGATGCTTATAAAAGAGGTTGGTCAAGCCATCAAGACTAGTGGTGTAAAGAAGCTGATTGTTTTCTTGGCTCCCACAGTTCATCTTGTCAATCAGGCATGTcacacaCAAttcaagaatataaaatatctgACAGATTTTCAAGTTGAGGAATACTATGGGGCTAAAGGAGTTGATACATGGAATTTGAAGACGTGGGAGAAGGAGATTAGTAACAATGATGTACTGGTTATGACACCCCAGATTCTTTTGGATGCCTTGAGAAAAGCATTTCTGCGTATAGAAATGATATGCTTGATGATTATTGATGAATGTCATAGAGCAACTGGCAACCATCCTTATGCAAGAATAATGAAGGAATTTTATCACCAAGCTAATGAAAAGCCAAAGATCTTCGGGATGACAGCATCACCAGTAGGCAAAAAAGGTGTTTCCTCTACTATGGATTGTGAGAATCAGATATCAGAACTTGAAAGCATATTGAATTCTCAGTGCACATGTGATAGTAGGTTTATACCAATAGAAGAaggtaaatgttttttttttttcccctgtaGATATACTGTTGAAGATCGGACAGAGATGGATCAATGTATCCCTTCTGCTAAAGAGAGTTGTACATTTTATGACCAAGCACGATCTTCTGCGTTGAGTTTGAAACCAAAGATTGAAGCCTTGTGGTTCAAGTGTGAAGTGTTGTTATCAGAAAATCAAAGTAACTATAAGGATGTGGACAACAAATTTAAGACGCTGTATCAGCGGATGTCCAATGAACTTGCAAAAATTTTGCATTGCCTTGAAGATCTTGGGATCCTATGTGCTTATGAGGCTGTTAAAATCTGTCATGAGAATTTCTCCAAAATTGAAGGGGAGTGTGAAATTTACAGAAAAGGTTATCTTCAGTGTATAACTTTTTTCGAagaagtaatcaaaataatcaaagaatCCCTCCATCTTGCTGATGCAAAGATTTTGGGGGTTGATTTTGATTATTCAAAGGCAGAAGATTTGGGATACATATCTCCAAAATTAGTTGAACTTATTAAACTCTTCCAGTCATTTGGAGAATCTAGTCAGGTGTTGtgccttatttttgttgataGAATCATTACAGCTAAGGTGATCGAAAGATTTGCAAAGAAAACTCCCCAGATTTCTCATTTCACAGTTTCCTATTTAACTGGAAACAATACGTCAGTTGATGCTCTGGCTCCTAAAAGGCAGAAGGAGATATTGGATTCTTTCCGCTCTGGAAAGGTCAATCTATTATTTACTACTGATGTACTTGAGGAAGGAATTCATGTGCCGAACTGCTCTTGTGTGATACGTTTTGACCTCCCAAAGACAGTTCGTAGTTATGTCCAATCTCGCGGAAGATCTAGGCAGGCTAACTCCCAATTTATATTGATGTTGGAGAGGGGAAACTTGAAGCAAAGAAATCAACTCTTTGACATCATTAGGAGTGAGCGCTCCATGACTGATGCATCTATTAATAAAGGCCATGAATCTAGTTTAAGGATGTTTACGGTGGGAAAAACAAAGGCATACTCTGTGGAATCTACTGGAGCATCTGTCACTTTAGATTCTAGTGCTAGTCTTATCAGCCAATACTGTGGAAAGCTCCCACGAGATAAGTACTCCTGTGCAAAGCCCAGTTTTGAGTTTATGCCTGTGGAAGAGGGTTACcaatgtaaattaatattacCACCTAATGCAGCTTTCCAAACAATAATTGGTCCTTCAGGAAAAGATATTCGTTTGGCAAAGCATCTTGTATGTTTCGAAGCTTGCAAGAAGCTGCATCAAATGGGTGCCTTAAATGACCATCTAGTTCCATTCATTGAAGATTCTTCCGAGGATGACCATATTGCAAGAAACAAAGAATCAAGTTCTGGTGCAGGAACCACAAAAAGAAAGGAGCTACATGGAACAACCAACATTCGTGCATTAAGTGGTGCATGGGGAGACAAACTTGATGGAGACAAATTTCATgcctataaatttgaattcacATGTAATATTGTTAGTGAAATATACTCCAGGTTTGTTCTTTTGATCGAGTCAAAGCTTGATGATGATGTGGGAAATGTAGAATTGGATCTTTATTTAGTCTCAAAGATCGTGAAAGCTTCTGTCTCTTCGTGTGGGCAAGTTGATTTGGATGCTGAGCAgATGATGAAAGCAAAGTGCTTCCATGAGCTTTTTTTCAATGGTTTGTTTGGGAGATTGATTGTTAGGTCCAAATCAGCAGGAGGGGAAAGGGAATTTTTACTTCAGAAAGACACAAAATCACTGTGGAGCCCAAAACACTTATATTTGCTTCTACCACTTGAGAATTTGAATGATATCTGTGAGGGATCTTTGCAAATAAATTGGCGTGGAATCAATTCTTGTGCTTCTGCAATTGAATTTTTAAGGAGGAATTTTTCTTTGGTCACTGGAGATTGTAATGATAACAACATAATCACATCAATTCATGATGCCAGTTCATCGGAGATGGAATGTGAAGGACCAAACAAGATTCACTTTGCTAATTGTGTGGTTGATGCTGATAATGTAAAAGACACAGTAGTTTTGGCCATTCACACTGggaaaatatattgtattattgaGATTGATAGTAACCTATCTGCGGAAAGTCCTTTCGATGGaaacaatgaaaaatcaaaGGAATGCATTACCTTCTCGGATTATTTCAGTAAAAGGTATGGGATTACACTGAAACATCCAGGACAGCCTCTGTTACGATTGAAGCAAAGTCATAATCCACACAATCTTCTTTTAACTTCCATGAGGAAGGTTAATGCACGGGACAAGTCGTCACAAATTGGCCCTGCAAACTCAAAAATGCCAGCTCATGTTCATGTTCCACCTGAGCTTCTATACTTTCTTGATGTTAAAAGAGATGTGTTGAAGTCACTGTACTTGCTGCCATCTCTGATGTACCGCATTGAATGTTTAATGTTATCCAGTCAGCTTAGAGAAGAGATAGATGGCCAAACTAGCAAGTTCAACATTCGCAGCTCACTGatTCTAGAAGCACTGACGACTTTGAGATGTAGTGAAAATTTTTCAATGGAACGTCTTGAGTTGCTAGGAGATTCTGTTTTGAAGTATGTGGTAAGCTGTCACCTATTTCTTAAATATCCTGAGAAACATGAAGGACAATTATCTGCCAGACGATCATGGGCTGTTTGTAATTCAACCCTACATAAACTGGGGACAGATCACAAATTACAGGGATATATTCGAGACTCTGCATTTGAACCACGCCGTTGGGTTGCTCCAGGACAGCGTTCTATACACCCTGTTTGTTGTGATTGTGGGTTGGAAACCCTTGAAGTGCCTTTAGATGTAAAATTTCATACCGATGATCCAAAAGTTGTGGTTGGGAAGTCTTGTGACAGGGGTCACCGCTGGATGTGCTCCAAGACTGTTGCTGACTGTGCAGAAGCTCTGATAGGAGCATATTATGTGGGTGGTGGACTCTTTGCTTCACTTAATGTGATGAAATGGCTCGGGATTGGCACTGAACTTGAACTATCCTTGGTTGATGAAGCAATCACTGCTGCATCTCTGCATACATGTATGCCAAAAGAAAGTGAGATTGCAAGccttgaaaagaaaattgggTATGAATTTTCTGTCAAGGGACTCTTACTGGAGGCAATCACACATTTGTCTGAGAAAGAACTTGGGATTGGCTGCTGCTACGAGAGGCTTGAATTTCTTGGTGACTCGGCATTGGACCTGCTTATCACTTGGCATCTTTATCAGAGTCACACAGATATTGATCCAGGGGTGTTGACTGACTTACGTTCTGCTTCTGTCAATAATGACAATTTTTCTGAAGTTGCTGTTAGACATAACCTTCACCAGCACCTTCTACATAGTTCAGGATTATTACTGAGCCAGATATCAGAATATGTGGAGGTCATTTCTGAATCAGATCCCAGATCACTCCCAAGGATTAGAGCTCCCAAGGTACTTGGAGATCTAGTGGAAAGTATTGCTGGGGCCATACTAATTGATACCAAGCTCAGTCTTGACCAAGTGTGGAATGTGTTCTATCCTCTGTTATCTCCCATTGTTACTCCTGATAAACTTGAATTGCCTCCATTTCGTGAATTAAATGAACTATGTGATTCACTTGGGtattttgtaaaagtaaaagaaaattgtgaaaaaaaggGATCCACAGTGAATGTTGAGGTTAGTGTGCAGCTGCCAGATGCCCTATTGGTTCAAGAAGGAAAGGGGGCAAGTAAAAAAACTGCAAAAGGAGAAGCTGCTTTTCATTTGTTGAAGGAACTTGAGAAGAGGGGAATTTCACATGGTAGTTTCATGTCCAAGGGAAAAAGAGATAATCCTGATCGTATCTATGATTCATCTCATCTCAAAATGGATTCTAGTATTTGTTCTTCTCAAATTGAAGAACATTCCTCAGATCCAGCATTACGTAAAAGGCCCAGATTGGATGAAACTAAATTAACTGCAAGTACGTTGCCTCTCAAAGACTCTTCCAGTGACATCTCTGGTTTTAGTGCTTCCATTCCAGttaatttatcaattaatatgaaGAAGGGAGGACCGCGGACCACACTATATGAAGTGTGTAAGAAACTACAGTGGCCAGTGCCTGCATTTGATTCAACAGAATATAAAGATAGATCTCTATTTGAATCCTGTGAGGGCCTGGAAGGAAGCAAGGGACATAACTGTTTCGTGTCAAAAATTACCCTGTGCATACCCAATTATGATAATATAGAATGCAAAGGAGAAGCTAGAAGTGATAAGAAGAGCTCCTTCGACTCTGCTGCAGTTCAAATGCTTCTTGAGCTACATAGACTGGGAAAAGTTTTAATTGATCCTCCCCCTTCTTCTTAG 5085 0.3827 MNFNIDSSDHNQSKKRKLPDADDSPAPELSCSNMDPRRYQLEVFEVARRRNTIAVLDTGSGKTLIAVMLIKEVGQAIKTSGVKKLIVFLAPTVHLVNQACHTQFKNIKYLTDFQVEEYYGAKGVDTWNLKTWEKEISNNDVLVMTPQILLDALRKAFLRIEMICLMIIDECHRATGNHPYARIMKEFYHQANEKPKIFGMTASPVGKKGVSSTMDCENQISELESILNSQCTCDSRFIPIEEGKCFFFFPCRYTVEDRTEMDQCIPSAKESCTFYDQARSSALSLKPKIEALWFKCEVLLSENQSNYKDVDNKFKTLYQRMSNELAKILHCLEDLGILCAYEAVKICHENFSKIEGECEIYRKGYLQCITFFEEVIKIIKESLHLADAKILGVDFDYSKAEDLGYISPKLVELIKLFQSFGESSQVLCLIFVDRIITAKVIERFAKKTPQISHFTVSYLTGNNTSVDALAPKRQKEILDSFRSGKVNLLFTTDVLEEGIHVPNCSCVIRFDLPKTVRSYVQSRGRSRQANSQFILMLERGNLKQRNQLFDIIRSERSMTDASINKGHESSLRMFTVGKTKAYSVESTGASVTLDSSASLISQYCGKLPRDKYSCAKPSFEFMPVEEGYQCKLILPPNAAFQTIIGPSGKDIRLAKHLVCFEACKKLHQMGALNDHLVPFIEDSSEDDHIARNKESSSGAGTTKRKELHGTTNIRALSGAWGDKLDGDKFHAYKFEFTCNIVSEIYSRFVLLIESKLDDDVGNVELDLYLVSKIVKASVSSCGQVDLDAEQMMKAKCFHELFFNGLFGRLIVRSKSAGGEREFLLQKDTKSLWSPKHLYLLLPLENLNDICEGSLQINWRGINSCASAIEFLRRNFSLVTGDCNDNNIITSIHDASSSEMECEGPNKIHFANCVVDADNVKDTVVLAIHTGKIYCIIEIDSNLSAESPFDGNNEKSKECITFSDYFSKRYGITLKHPGQPLLRLKQSHNPHNLLLTSMRKVNARDKSSQIGPANSKMPAHVHVPPELLYFLDVKRDVLKSLYLLPSLMYRIECLMLSSQLREEIDGQTSKFNIRSSLILEALTTLRCSENFSMERLELLGDSVLKYVVSCHLFLKYPEKHEGQLSARRSWAVCNSTLHKLGTDHKLQGYIRDSAFEPRRWVAPGQRSIHPVCCDCGLETLEVPLDVKFHTDDPKVVVGKSCDRGHRWMCSKTVADCAEALIGAYYVGGGLFASLNVMKWLGIGTELELSLVDEAITAASLHTCMPKESEIASLEKKIGYEFSVKGLLLEAITHLSEKELGIGCCYERLEFLGDSALDLLITWHLYQSHTDIDPGVLTDLRSASVNNDNFSEVAVRHNLHQHLLHSSGLLLSQISEYVEVISESDPRSLPRIRAPKVLGDLVESIAGAILIDTKLSLDQVWNVFYPLLSPIVTPDKLELPPFRELNELCDSLGYFVKVKENCEKKGSTVNVEVSVQLPDALLVQEGKGASKKTAKGEAAFHLLKELEKRGISHGSFMSKGKRDNPDRIYDSSHLKMDSSICSSQIEEHSSDPALRKRPRLDETKLTASTLPLKDSSSDISGFSASIPVNLSINMKKGGPRTTLYEVCKKLQWPVPAFDSTEYKDRSLFESCEGLEGSKGHNCFVSKITLCIPNYDNIECKGEARSDKKSSFDSAAVQMLLELHRLGKVLIDPPPSS 1694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3567 1694 ProSitePatterns Ribonuclease III family signature. 1305 1313 IPR000999 GO:0004525|GO:0006396
Ssu1g3567 1694 CDD RIBOc 1285 1433 IPR000999 GO:0004525|GO:0006396
Ssu1g3567 1694 MobiDBLite consensus disorder prediction 1 33 - -
Ssu1g3567 1694 SMART helicmild6 434 529 IPR001650 -
Ssu1g3567 1694 SMART ultradead3 32 241 IPR014001 -
Ssu1g3567 1694 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 596 686 IPR005034 GO:0016891
Ssu1g3567 1694 Pfam Type III restriction enzyme, res subunit 47 204 IPR006935 GO:0003677|GO:0005524|GO:0016787
Ssu1g3567 1694 Pfam Dicer dimerisation domain 596 681 - -
Ssu1g3567 1694 Gene3D - 30 245 IPR027417 -
Ssu1g3567 1694 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1471 1506 IPR014720 -
Ssu1g3567 1694 ProSiteProfiles PAZ domain profile. 916 1031 IPR003100 GO:0005515
Ssu1g3567 1694 PANTHER ENDORIBONUCLEASE DICER HOMOLOG 3 19 1685 - -
Ssu1g3567 1694 CDD DEXHc_dicer 36 231 - -
Ssu1g3567 1694 Gene3D - 1438 1507 - -
Ssu1g3567 1694 CDD RIBOc 1075 1239 IPR000999 GO:0004525|GO:0006396
Ssu1g3567 1694 Gene3D - 400 564 IPR027417 -
Ssu1g3567 1694 SUPERFAMILY RNase III domain-like 1069 1246 IPR036389 GO:0004525|GO:0006396
Ssu1g3567 1694 SMART PAZ_2_a_3 896 1055 IPR003100 GO:0005515
Ssu1g3567 1694 MobiDBLite consensus disorder prediction 9 23 - -
Ssu1g3567 1694 SMART riboneu5 1284 1435 IPR000999 GO:0004525|GO:0006396
Ssu1g3567 1694 SMART riboneu5 1075 1248 IPR000999 GO:0004525|GO:0006396
Ssu1g3567 1694 Gene3D - 1603 1682 - -
Ssu1g3567 1694 Pfam PAZ domain 916 1053 IPR003100 GO:0005515
Ssu1g3567 1694 PANTHER DICER-RELATED 19 1685 - -
Ssu1g3567 1694 Gene3D paz domain 905 1028 - -
Ssu1g3567 1694 CDD SF2_C_dicer 405 537 - -
Ssu1g3567 1694 ProSiteProfiles Ribonuclease III family domain profile. 1269 1412 IPR000999 GO:0004525|GO:0006396
Ssu1g3567 1694 Gene3D Dicer dimerisation domain 591 689 IPR038248 -
Ssu1g3567 1694 SUPERFAMILY RNase III domain-like 1268 1432 IPR036389 GO:0004525|GO:0006396
Ssu1g3567 1694 Pfam Helicase conserved C-terminal domain 422 526 IPR001650 -
Ssu1g3567 1694 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 43 222 IPR014001 -
Ssu1g3567 1694 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 84 544 IPR027417 -
Ssu1g3567 1694 ProSiteProfiles Ribonuclease III family domain profile. 1056 1228 IPR000999 GO:0004525|GO:0006396
Ssu1g3567 1694 SUPERFAMILY PAZ domain 917 1029 IPR036085 GO:0005515
Ssu1g3567 1694 Gene3D Ribonuclease III domain 1258 1432 IPR036389 GO:0004525|GO:0006396
Ssu1g3567 1694 Gene3D Ribonuclease III domain 1057 1239 IPR036389 GO:0004525|GO:0006396
Ssu1g3567 1694 Pfam Ribonuclease III domain 1093 1227 IPR000999 GO:0004525|GO:0006396
Ssu1g3567 1694 Pfam Ribonuclease III domain 1305 1411 IPR000999 GO:0004525|GO:0006396
Ssu1g3567 1694 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 409 567 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3567 Ssu-Chr1 90836328 90857928 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3567 453 526 Eukaryotic Initiation Factors Gene Family AT3G19760 39.189 3.82e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3567 K11592 - gmx:100806831 2836.6