Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3566 ATGGGTGGTGATGGTAGAGTTGAAGTTGTGAGTGGCAAGGGGTGTTCGAGGCTGTTTTCATCTTCACTTCCTTCATTCAGAGGTTTGCAACCGTTGGAGCCAATGTCTCCTGTTCCGTCCTCTGTGCAAGTGCCATCAACTGCTCCTTTTGCTGGTCTTGTCATTTGCGTTACTGGTTTATCTAAAGAAGCAAGGGATCAGGTCATGGAGGCTACAGAGAGATTAGGTGGCCAGTATAGCCCCAATTTGCATCCTCAATGTACCCATTTGGTGGTTCAGAGTTTTGGTGGACGCAAGTTTGAGCATGCGCTGAAGCATGGAGCAAAAAATGGCCTCTTTGTTGTCACACTGGGTTGGTTTGTGGATAGTGTCaggaaaaatgTGAGGTTGAGTGAATCACATTATAAAGTGAAGAGTTATGGAGATAACAACATGCTCTTGGATGATATTAGACTGCTTCCTGAGTGTGCAACTGCTGAAAATCATTGTCTTCCTGCAAGAATCCACCAAACAAAGCAAGCTAATAGTGTTGAAGAACTTCACAGATTCTCTGGGAGAGAGTCTACCAGAAATTCGGACTCAACTTTGTCTGGCTGCTCCATTTATGTTGATGCAGGCATTTCATCTGAATTGCGGAACAAGGTTATTGAGACTGCTTCAAGAGAAGGTGCTAGTTTGGTGGAACAATGGTTTGTTGGCTGCAATGTTAGTCATGTAGTAACTGAAGGGACATCAATCCAAAGATATCTTGGATTCTCTAGTAACCTCATTACACCTCTGTGGATTCTCAAAACAGCTAAGGAGAAATATGCGCAAAGGCTTGTTCACATGTCTGTTGATTTGGCAAAGCAAGTTGGCCTGATGCTAGAAGACATTCATAGGGGCATTTCAGGGAAGGAAGTAATAAAGCGAAAAGTCTGTGACAATCTTCCGGACAGTGAAAGTGAAGTTGGTTACAAAGAAAGGCAACAAATTGTGAATTCTGCAAAAAATGGAGTCAGAAGTCGCCGTGGTCGTCGAATGCAGACTTGTCAGACTCCAATACGTCCTATAACCCCCAACAACCTTCTAGATTCTATCTGTTGGTCTATATCCGAGCCGACTTCAACTGCTTCCATTTACACAGACTCTTTCAGTGTTGAAGATCCTAGTGAAAGTCATACTTCAATATTTTTCGACGCAAAAGGGGATGGCAAGGATTCAGAAGCTTCATTTTCAAACTCCACTCGTCCTCTAACAGAAAGTGAGAAATCTGAGTTGATATTCAAAAACCATTTCCTTACCATACTCTTCCCAATTGACCGATTCGGCGAGATGGGTCCTTCATCAAGAACGTTTTTCAGCCATAATGGTTTTACATGTCTTCAGGTGTTGGATCATGTCCATGCATTTTATCAGGAGAACATGCCAAGGCAGGAAATAGAAGCTGCAATTCATAGTGATTCTAGACACGCTGATAGGCTTCGATCAGTATACTCCAGTAAGGAAACAGTAGAACGTGGCTATGTAATATTCAAACGGGTTCAATTCTTGGGTAGTCGTACAAGTTTTGAAATGTTGAAGCGTGTAACTGGGGACAACAACTCCAACGTTTATGAGCTATTACTTAGGGCCTAA 1617 0.4255 MGGDGRVEVVSGKGCSRLFSSSLPSFRGLQPLEPMSPVPSSVQVPSTAPFAGLVICVTGLSKEARDQVMEATERLGGQYSPNLHPQCTHLVVQSFGGRKFEHALKHGAKNGLFVVTLGWFVDSVRKNVRLSESHYKVKSYGDNNMLLDDIRLLPECATAENHCLPARIHQTKQANSVEELHRFSGRESTRNSDSTLSGCSIYVDAGISSELRNKVIETASREGASLVEQWFVGCNVSHVVTEGTSIQRYLGFSSNLITPLWILKTAKEKYAQRLVHMSVDLAKQVGLMLEDIHRGISGKEVIKRKVCDNLPDSESEVGYKERQQIVNSAKNGVRSRRGRRMQTCQTPIRPITPNNLLDSICWSISEPTSTASIYTDSFSVEDPSESHTSIFFDAKGDGKDSEASFSNSTRPLTESEKSELIFKNHFLTILFPIDRFGEMGPSSRTFFSHNGFTCLQVLDHVHAFYQENMPRQEIEAAIHSDSRHADRLRSVYSSKETVERGYVIFKRVQFLGSRTSFEMLKRVTGDNNSNVYELLLRA 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3566 538 CDD BRCT_TopBP1_rpt2_like 49 127 - -
Ssu1g3566 538 SUPERFAMILY BRCT domain 45 138 IPR036420 -
Ssu1g3566 538 PANTHER BRCT DOMAIN DNA REPAIR PROTEIN-RELATED 3 538 - -
Ssu1g3566 538 ProSiteProfiles BRCT domain profile. 45 137 IPR001357 -
Ssu1g3566 538 SMART BRCT_7 47 127 IPR001357 -
Ssu1g3566 538 SMART BRCT_7 193 269 IPR001357 -
Ssu1g3566 538 Gene3D BRCT domain 48 139 IPR036420 -
Ssu1g3566 538 ProSiteProfiles BRCT domain profile. 191 269 IPR001357 -
Ssu1g3566 538 Pfam twin BRCT domain 53 119 IPR001357 -
Ssu1g3566 538 Pfam Family of unknown function (DUF6699) 361 522 IPR046522 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3566 49 137 Core DNA Replication Machinery Family AT1G77320 38.202 6.88e-11 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3566 - - gmx:100815253 959.518
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3566 1 90824764 90829230 Ssu1g3566 1 90824764 90829230 ECH