Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3565 ATGGCGGACGTGATGGTCATGACAGAGATCGAAGACACGGCGCTGCGTCTCGGCGTCGATCTTTCCACTCTCGATCTCGACGCCATTCGCCTCCCGCCAGGCGAAAATTGCGGCATCGTCAGTGATGACGAGGATATTTACCAAGAGGATAATCTCGAATTTGAGTCTGGATTTGGCAACATCATAGTCGTTGATAACCTTCCCGTCGTTCCGAAGGAGAAGTTCGAGAAGCTCGAAGGAGTGGTTCGTAAAATTTACAGTCAGATTGGTGCTATCAAGGAGGATGGCCTCTGGATGCCGGTTGATTCTGAAACTGATAAAACCCTAGGTTACTGCTTCATTGAGTACAATACCCCTCAGGAAGCGGAGCTTGCAAAGGAGAAGACTCATGGGTACAAATTGGACCGTGCACACATATTTTCCGTGAGCATGTTTGATGACTTTGATAGGTTTATGAAAGTTCCAAATGAGTGGGCTCCTCCTGAAACTAATCCATATGTTCCGGGGGAAAATCTTCAACATTGGCTCACTGATGCAAAGGCCAGGGACCAGTTTGTGATTCGTGCTGGTTCAGATACTGAGGTTTTGTGGAACGATGCAAGGCATTTAAAGCCTGATCCTGTTTATAAGCGTGCGTTTTGGACAGAGAGTTTTGTTCAATGGTCTCCGCTGGGGACATACTTGGCCACTGTTCACAGACAGGGGGCAGCAGTCTGGGGAGGTGCTTCAAGCTTTAACAGACTTATGCGTTATGCACATCCTCAGGTAAAACTTATTGATTTTTCACCTGGTGAGAAGTATTTGGTAACTTATAGCAGCCATGAACCAAGCAATCCTCGAGATGCCAATagggTTGTGATAAATGTATTTGATGTGAGGACTGGTAAAGTGATGAGGGACTTTAAAGGAAGTGCTGATGATTTTGCAGTTGGAGGTGCTGGCGGTGTTACTGGAGTGTCATGGCCTGTTTTcaaATGGAGTGGTGGAAGAGATGATAAATACTTTGCAAGGATGGGGAAAAATGTACTTTCCGTATATGAGACAGAGACCTTTTCTCTCATTGACAAAAAGTCCTTAAAGGTTGAAAATATAATGGATTTCAGCTGGTCTCCAACTGATCCAATTATTGCTCTCTTTGTTCCTGAAATGGGAGGTGGTAACCAGCCTGCCAGGGTAAGTCTGATTCAAATCCCTAGCAAAGAGGAACTCAGGCAGAAGAATCTATTCAGTGTCAGTGACTGCAAGTTGTACTGGCAAAGCAATGGAGACTACCTTGCTGTTAATGTAGACCGgtacacaaaaacaaaaaaaagcacATACACAGGCTTTGAGCTTTTCCGTATAAAAGAACGGGACATACCAATTGAAGTTTTGGAGCTTGAGAATAAGAATGACAAGATCATTGCATTTGCTTGGGAGCCAAAAGGCCACAGGTTTGTGGTTATTCATGGTGATAACCCTAAGCCTGATGTTAGCATTTACTCCATGCGGACAGAAAAGAATGCTGGCCGGGTTTCAAAACTCACTACTCTTAAGGGCAAGCAAGCAAATGCTCTGTTTTGGTCACCTGCGGGTCGCTACATTGTACTAGCTGGGTTGAAAGGCTTCAATGGACAGTTGGAATTTTACAATGTTGATGAACTTGAAACCATGGCTACTGCTGAACATTTTATGGCAACAGATATTGAATGGGATCCAACTGGAAGGTATGTTGCAACTTCTGTGACTTCAGTTCATGAAATGGAAAATGGTTTCAATATATGGTCTTTCAATGGCAAGCATCTGTATCGGATTCTGAAGGATCACTTCTTTCAGTTCTTATGGCGACCAAGGCCGCCATCTTTCCTGAGTCCTGAGAAAGAGGAAGAGATTGCCAAGAACTTGAAGAAGTACAGTAAGAAATACGAGGCAGAAGATCAAGATGTTTCACTGCTGCTGAGTGAGCAGGAGCGTGAGAAGCGTAGAATGTTGAAAGAGGAGTGGGACAAGTGGGTTAATGAATGGAAGCGGATGCACGAAGAAGAGAGTTTACAGAGGCAAAAGCTTAGGGACGGAGAGGCTAGTGATGAAGAGGAGGAATACGAGGCAAAGGACATAGAAGTGGAGGAAGTGATCGATGTAACAGAAGAGGTCCTTCACCTCGAGTATGGTCAAGAGTGA 2160 0.4417 MADVMVMTEIEDTALRLGVDLSTLDLDAIRLPPGENCGIVSDDEDIYQEDNLEFESGFGNIIVVDNLPVVPKEKFEKLEGVVRKIYSQIGAIKEDGLWMPVDSETDKTLGYCFIEYNTPQEAELAKEKTHGYKLDRAHIFSVSMFDDFDRFMKVPNEWAPPETNPYVPGENLQHWLTDAKARDQFVIRAGSDTEVLWNDARHLKPDPVYKRAFWTESFVQWSPLGTYLATVHRQGAAVWGGASSFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINVFDVRTGKVMRDFKGSADDFAVGGAGGVTGVSWPVFKWSGGRDDKYFARMGKNVLSVYETETFSLIDKKSLKVENIMDFSWSPTDPIIALFVPEMGGGNQPARVSLIQIPSKEELRQKNLFSVSDCKLYWQSNGDYLAVNVDRYTKTKKSTYTGFELFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRFVVIHGDNPKPDVSIYSMRTEKNAGRVSKLTTLKGKQANALFWSPAGRYIVLAGLKGFNGQLEFYNVDELETMATAEHFMATDIEWDPTGRYVATSVTSVHEMENGFNIWSFNGKHLYRILKDHFFQFLWRPRPPSFLSPEKEEEIAKNLKKYSKKYEAEDQDVSLLLSEQEREKRRMLKEEWDKWVNEWKRMHEEESLQRQKLRDGEASDEEEEYEAKDIEVEEVIDVTEEVLHLEYGQE 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3565 719 Hamap Eukaryotic translation initiation factor 3 subunit B [EIF3B]. 48 713 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Ssu1g3565 719 SUPERFAMILY RNA-binding domain, RBD 50 139 IPR035979 GO:0003676
Ssu1g3565 719 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED 5 712 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Ssu1g3565 719 MobiDBLite consensus disorder prediction 672 698 - -
Ssu1g3565 719 SUPERFAMILY DPP6 N-terminal domain-like 218 598 - -
Ssu1g3565 719 Gene3D - 414 617 IPR015943 GO:0005515
Ssu1g3565 719 SMART rrm1_1 61 143 IPR000504 GO:0003723
Ssu1g3565 719 CDD RRM_eIF3B 59 142 IPR034363 -
Ssu1g3565 719 Gene3D - 181 383 IPR015943 GO:0005515
Ssu1g3565 719 PIRSF Transl_init_eIF3b 7 714 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Ssu1g3565 719 Pfam Eukaryotic translation initiation factor eIF2A 406 606 IPR013979 -
Ssu1g3565 719 PANTHER BNACNNG51870D PROTEIN 5 712 - -
Ssu1g3565 719 MobiDBLite consensus disorder prediction 672 687 - -
Ssu1g3565 719 Gene3D - 55 154 IPR012677 -
Ssu1g3565 719 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 60 147 IPR000504 GO:0003723
Ssu1g3565 719 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 82 136 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3565 Ssu-Chr1 90806274 90810264 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3565 5 713 Eukaryotic Initiation Factors Gene Family AT5G27640 76.761 0.0 1178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3565 K03253 - gmx:100817394 1390.56