Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3562 ATGGACATGGAGACGCATGCCATGGCTGGTGCTAGTGATTCTAACGCTGATCACACCCCAATATCTTCTTGTgttaatgataataacaacaaGTTATACAAAGGGGTGAGAAAGCGAAAGTGGGGCAAATGGGTTTCTGAAATTAGGCTTCCCAATAGCCGTGAACGCATATGGCTAGGGTCTTACGACTCTCCTGAAAAGGCGGCACGAGCCTTCGATGCTGCCCTTTACTGCCTACGTGGTCGCCATGCCAATTTCAATTTCCCCAACACACCTTGCAACATGGACGTCAATGTGGCTGTGGCTGGTGACCAATCTCTTGCCCCACAAGAGATTCAAGAGGTTGCTGCTAAGTTTGCAAACGAGGACCCGCTACTAGTAAAACCTCTTGATCATATTAATCAAGAACAACCTCAACGTGGTGGTGGTACTTCTTCATCATTTggatcaaaattaactaaatcgGACAGCATAGCAGAGAGTAGTACTACTACCTATACCCCCACCACCACTGCCTCGTCATGTTCAACTACTATGTATGAATGTGATGGAACGGCGCAAGTGGACCATGGGGACATGGATTGGAATTTCTTGAACGTGTTTGATTACTCCAATGAGGTGGTTCCTGTTGTCTCCGACTATGATCACTATTATGAGCTAGACAAGGTGCACTCAGGTGAGTTATTATATTCCACTCCACCCCCACCTCCTTTTGAGGGTTACGAAGGATTAATTGAAGCTGATGATGAGGATCCTTTTTCTCACCAATCATTCCTTTGGAATTGGAACTTTTGA 795 0.4403 MDMETHAMAGASDSNADHTPISSCVNDNNNKLYKGVRKRKWGKWVSEIRLPNSRERIWLGSYDSPEKAARAFDAALYCLRGRHANFNFPNTPCNMDVNVAVAGDQSLAPQEIQEVAAKFANEDPLLVKPLDHINQEQPQRGGGTSSSFGSKLTKSDSIAESSTTTYTPTTTASSCSTTMYECDGTAQVDHGDMDWNFLNVFDYSNEVVPVVSDYDHYYELDKVHSGELLYSTPPPPPFEGYEGLIEADDEDPFSHQSFLWNWNF 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3562 264 CDD AP2 31 91 IPR001471 GO:0003700|GO:0006355
Ssu1g3562 264 PRINTS Ethylene responsive element binding protein signature 55 71 IPR001471 GO:0003700|GO:0006355
Ssu1g3562 264 PRINTS Ethylene responsive element binding protein signature 33 44 IPR001471 GO:0003700|GO:0006355
Ssu1g3562 264 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF018 15 264 - -
Ssu1g3562 264 MobiDBLite consensus disorder prediction 135 175 - -
Ssu1g3562 264 Gene3D AP2/ERF domain 32 90 IPR036955 GO:0003700|GO:0006355
Ssu1g3562 264 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 15 264 - -
Ssu1g3562 264 SMART rav1_2 32 95 IPR001471 GO:0003700|GO:0006355
Ssu1g3562 264 MobiDBLite consensus disorder prediction 137 175 - -
Ssu1g3562 264 Pfam AP2 domain 33 81 IPR001471 GO:0003700|GO:0006355
Ssu1g3562 264 MobiDBLite consensus disorder prediction 1 23 - -
Ssu1g3562 264 SUPERFAMILY DNA-binding domain 32 89 IPR016177 GO:0003677
Ssu1g3562 264 ProSiteProfiles AP2/ERF domain profile. 32 89 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3562 Ssu-Chr1 90743438 90744232 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3562 33 147 AP2-EREBP Transcription Factor Family AT1G74930 59.350 5.48e-42 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ssu1g3562 AP2 5.6e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3562 - - gmx:100817386 360.147
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3562 1 90743438 90744232 Ssu1g3562 1 90743438 90744232 ECH
Ssu1g3562 1 90743438 90744232 Ssu5g0502 5 10725953 10726672 ECH