Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3556 ATGGTCTGCGAGATGGAGAATGATTGTATAGAGGACATGGACATTGAGGCCCTTCCTTCGATGTGGCCTGAAGATATTGGAACTGAAGTTGGAAAGCAGTTTAATATAGAAAAGCCTGGAAGGGACCAAGACATGTTAGAGGAAGTTACAATCATAGAGGAGCCAACTATAGTTGATTTCAAGCGTCTCATGGACCTTACAAATTTCACAGAAAAGGGGTCTTCTCAGTTGGCATATCTAATGAAGCAATGGGAGTACAAGCAGGCCAATGTTGTGCGTCTTCTCAGGGAAGAACTTGACCACCTAAGCAAACAAAGGCAGGATGTTGAGCTCAGGAAGTTGGAGATATTGGAAAAGCATCGATTTGAGGAAGAACGATATGGAGGTGATAAACGGCCGGTTTCTATATTGGATGATTTATATGATGGTATGTGGCAAGATATACCTTGCAGGAAAAGTGATGTTGTGGTTCAAAGCAAGAGGAGTGAGATTGATGCTGAGTATGGTACTGTCACGTACTGGAAACAGCGTGCCTTGCATTTAGAGAAGCAGCTGGAGGCAAGTATCCAAAGAGAACAGATActtgaagaaaagttgcaagAAAGTATAGCAAACATTGAAAGGCAGTCCTCACCTGTGGAAGAACTCTCCCAGATCCTCAAGAGGGCAGATAATTTCTTGCATTTCATTCTCCAAAATGCACCTGTTGTTATTGGCCATCAGGACAAAGAGTTGCGCTATTGCTTTATCTATAATCATTTTCCAAGTTTACAAGAGGAGGACATCATAGGAAAAACTGATGTTGAGATATTCACGGGAGCTGGTGTTAAGGAATCTCAAGAATTTAAGAGAGAAGTTTTGGAGAAAGGATTACCTGCAAAAAGGGAAATCACTTTTGAGACAGAACTATTTGGGTCGAAGACATTCTTGATATATGTAGAACCTGTCTTTAGCAAGGCAGGGGAGACAATTGGAATAAATTACATGGGAATGGATATAACAGATCAGgtgagaaaaagagaaaggatgGCAAAGATTCGGGAAGAGATTGCTGTTCAGAAAGCCAAGGAAACAGAACTGAATAAAACCATTCACATTACAGAGGAAACTATGCGAGCAAAACAAATGCTGGCAACAATGTCTCATGAGATAAGGTCTCCATTGTCTGGGGTTGTTAGCATGGCTGAAATTCTTTCCAACACAAAACTCGATTGGGAGCAAAGACAACTCTTGGATCTCATGCTATCTTCTGGAGATTTGGTTCTTCAACTTATAAATGACATACTTGATCTTTCCAAGGTTGAGTCAGGAGTCATGAAATTGGAAGCTACTAAATTCCGGCCAAGAGAGGTAGTCAAGCATGTACTCCAGACTGCTGTGGCTTCATTGCAAAAAATATTAACCTTAGAAGGACATGTGGCAGATGATGTACCTATTGAGGTCATTGGTGATGTTTTAAGGATGCGGCAAATTCtcacaaatttaattagCAATGCCATCAAGTTTACCCATGAAGGCAAAGTTGGAATAAACCTTTACGTTGTGCCAGAGCCTACTTTTACAAAAGCAGAAGGCATCCAAAAGATGACTCCAGACCATTCAAATATTTCAGTGAATGGtgtgaaagaagagaaatatcTCTCAACACCTCAGAGTGGCAATGATCAAAATCTTGATGGTTGTCAAAAACATGATGACCGTCCCAGCCAAAACCATGCATTCAATGATGAATGTAGATCATCGGTTAAAAGCGAATGCTCAATGAACGGAGATACCGAGGAGCAACCTCATGCAGCTGAAACAACAGTGTGGATTCGTTGTGATGTGTATGACACAGGCATAGGAATACCAGAAGATGCTATACCAACTTTGTTTAAAAGGTACATGCAAGTCAGTGCAGATCACGCTCGAAAGTATGGTGGCACAGGACTAGGACTAGCAATATGCAAACAACTGGTTGAGTTGATGGGGGGTCAACTAACAGTGTCTAGCAAAGAACACCATGGTTCTACCTTCACTTTCATACTCCCATACAAGGTTTCAATTACTAGCGATAATTCTGATGATCCGGATGAGCTCTCTGATGTAGAGAATAATGATGCTGCTTCTGATGATACAATAGAGAGTTTCTTCCAATTCCAACCACGCACTTTGGGCTCTCTATTCTCTTCTAATGGATCTAGCAGGACACAGAAGTTATTACCGCACAAAATTGGCTACACCAGCTCAAATAAATTTGGTGGGTTTTCTGAGAGTTTATATTCATTCCCCTCCAATGATATCATGTCAAAAGGGATATGTTCAGTTGATGATGCATCTTCAGTGGTTGATGCTCCGGAGATGTCTGAATCGGCTAGTTCATCTGGTCACAGCCCAGAAACAAAGAATAAAAGTTCAGTTAGCAGAGATAAACAGCACCAAGATAAGGCTCATGCTTGGTCCCTGAATGGTTATGCAGATTCCTCTGAAGCTACTGTGGCAAATAGAGAAATGGCTGTAGCAACAAAGTCTAGTGAACCCCAACAAACTTGTCAGGGTCAAGGGAAGGCAAACGTGACTACTGAATGTGTTATAAGCAGCAGCACATCAGAAGTAACCAAATCCACATTAAAGCCTAAGATCCTTCTTGTTGAAGATAACAAGATTAATGTCATGGTGACCCGGTCCATGATGAAGCAATTAGGCCATAGCATAGATGTTGTGAATAATGGAATGGAAGCAGTACGTGCAATTCAGCGCCACATTTATGGTCTGGTTCTGATGGATGTCTGCATGCCAGTTATGAATGGTCTTCAAGCAACAAAACTGATTCGGACTTTTGAGGAAACAGGCAATTGGGATGCTGCAAGAAATGCTGGAATCGAGCAAAGTCTACCAGATTCAGATCATGAATGTTCTGTACGATCTACAAAGCGGATTCCCATTGTTGCGATGACAGCAAATGCTTTGTCAGAGAGTGCTGAAGAGTGTTTTGCAAATGGTATGGACTCGTTTGTGTCAAAACCTGTTACTTTCCAAAAACTGAAAGAGTGTATTGAACAATACCTAAGGTGA 3054 0.4054 MVCEMENDCIEDMDIEALPSMWPEDIGTEVGKQFNIEKPGRDQDMLEEVTIIEEPTIVDFKRLMDLTNFTEKGSSQLAYLMKQWEYKQANVVRLLREELDHLSKQRQDVELRKLEILEKHRFEEERYGGDKRPVSILDDLYDGMWQDIPCRKSDVVVQSKRSEIDAEYGTVTYWKQRALHLEKQLEASIQREQILEEKLQESIANIERQSSPVEELSQILKRADNFLHFILQNAPVVIGHQDKELRYCFIYNHFPSLQEEDIIGKTDVEIFTGAGVKESQEFKREVLEKGLPAKREITFETELFGSKTFLIYVEPVFSKAGETIGINYMGMDITDQVRKRERMAKIREEIAVQKAKETELNKTIHITEETMRAKQMLATMSHEIRSPLSGVVSMAEILSNTKLDWEQRQLLDLMLSSGDLVLQLINDILDLSKVESGVMKLEATKFRPREVVKHVLQTAVASLQKILTLEGHVADDVPIEVIGDVLRMRQILTNLISNAIKFTHEGKVGINLYVVPEPTFTKAEGIQKMTPDHSNISVNGVKEEKYLSTPQSGNDQNLDGCQKHDDRPSQNHAFNDECRSSVKSECSMNGDTEEQPHAAETTVWIRCDVYDTGIGIPEDAIPTLFKRYMQVSADHARKYGGTGLGLAICKQLVELMGGQLTVSSKEHHGSTFTFILPYKVSITSDNSDDPDELSDVENNDAASDDTIESFFQFQPRTLGSLFSSNGSSRTQKLLPHKIGYTSSNKFGGFSESLYSFPSNDIMSKGICSVDDASSVVDAPEMSESASSSGHSPETKNKSSVSRDKQHQDKAHAWSLNGYADSSEATVANREMAVATKSSEPQQTCQGQGKANVTTECVISSSTSEVTKSTLKPKILLVEDNKINVMVTRSMMKQLGHSIDVVNNGMEAVRAIQRHIYGLVLMDVCMPVMNGLQATKLIRTFEETGNWDAARNAGIEQSLPDSDHECSVRSTKRIPIVAMTANALSESAEECFANGMDSFVSKPVTFQKLKECIEQYLR 1017
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3556 1017 Gene3D - 360 437 - -
Ssu1g3556 1017 Gene3D - 866 1017 - -
Ssu1g3556 1017 MobiDBLite consensus disorder prediction 779 795 - -
Ssu1g3556 1017 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 5 1016 - -
Ssu1g3556 1017 ProSiteProfiles Histidine kinase domain profile. 379 680 IPR005467 -
Ssu1g3556 1017 Gene3D - 438 684 IPR036890 -
Ssu1g3556 1017 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 371 437 IPR036097 GO:0000155|GO:0007165
Ssu1g3556 1017 PANTHER HISTIDINE KINASE CYTOKININ RECEPTOR 5 1016 - -
Ssu1g3556 1017 SMART REC_2 872 1012 IPR001789 GO:0000160
Ssu1g3556 1017 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 426 678 IPR036890 -
Ssu1g3556 1017 CDD REC_hyHK_CKI1_RcsC-like 874 1012 - -
Ssu1g3556 1017 SMART HKATPase_4 483 680 IPR003594 -
Ssu1g3556 1017 PRINTS Bacterial sensor protein C-terminal signature 605 619 IPR004358 GO:0016310|GO:0016772
Ssu1g3556 1017 PRINTS Bacterial sensor protein C-terminal signature 640 658 IPR004358 GO:0016310|GO:0016772
Ssu1g3556 1017 PRINTS Bacterial sensor protein C-terminal signature 664 677 IPR004358 GO:0016310|GO:0016772
Ssu1g3556 1017 Gene3D PAS domain 212 349 - -
Ssu1g3556 1017 MobiDBLite consensus disorder prediction 546 577 - -
Ssu1g3556 1017 Coils Coil 92 112 - -
Ssu1g3556 1017 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 483 678 IPR003594 -
Ssu1g3556 1017 SUPERFAMILY PYP-like sensor domain (PAS domain) 217 334 IPR035965 -
Ssu1g3556 1017 SMART HisKA_10 372 437 IPR003661 GO:0000155|GO:0007165
Ssu1g3556 1017 MobiDBLite consensus disorder prediction 775 809 - -
Ssu1g3556 1017 Coils Coil 178 209 - -
Ssu1g3556 1017 SUPERFAMILY CheY-like 872 1017 IPR011006 -
Ssu1g3556 1017 Pfam His Kinase A (phospho-acceptor) domain 374 437 IPR003661 GO:0000155|GO:0007165
Ssu1g3556 1017 Pfam Response regulator receiver domain 874 941 IPR001789 GO:0000160
Ssu1g3556 1017 CDD HisKA 371 433 IPR003661 GO:0000155|GO:0007165
Ssu1g3556 1017 MobiDBLite consensus disorder prediction 559 573 - -
Ssu1g3556 1017 CDD HATPase_EvgS-ArcB-TorS-like 488 677 - -
Ssu1g3556 1017 ProSiteProfiles Response regulatory domain profile. 873 1016 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3556 Ssu-Chr1 90531540 90536897 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3556 1 1016 Histidine Kinase Gene Family AT5G10720 57.339 0.0 1105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Ssu1g3556 HATPase_c 5.4e-28 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3556 - - gmx:100819520 1820.44