Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3552 ATGGCTTCCAAGCTCTGCGACTCCTGCAAATCCGCCACCGCCACGCTCTACTGCCGCCCCGACGCGGCCTTCCTCTGCGGCGCGTGCGACTCCAAGGTCCACGCCGCCAACAAGCTCGCGTCGCGCCACCCGCGCGTGTCGCTCTGCGAGGTGTGCGAGCAGGCGCCCGCGCACGTGACCTGCAAGGCCGACGCCGCCGCCCTCTGCCTCGCCTGCGACCGCGACATCCACTCCGCCAACCCCCTCGCCAGCCGCCACGAGCGCCTCCCGGTCGTTCCCTTCTTCGAGTCCGTTCACTCCGTTAAGGCCTCCTCGCCGATCAACTTCCTCGACGACCACCGCTTCTTCTCCGACGCCGACGCTGACGTCAGCACCGAGGAGGCCGAGGCCGCTTCCTGGTTGCTGCCTACTCCGAAGACAGATCTAAATTCCTCTCAGTACTTGTTCTCGGAATCGGAACCGGTTCCGTACATAGATCTGGATTACGGCCAAGTGGATCCGAAAGCGGACCAGAAGAGCTCCGGCACCGCCGACGGCGTCGTTCCGGTGCAGAGCAACTTCGAGCCGTTCGCCTACGGTTACAAGTACAACTCGACTCTGTCGCAGTCGCAGTCTCAGATGAGCCAAAGTGTATCGTCGTCGTCGATGGAGGTTGGAGTCGTGCCGGACGGGAACACGATGTCGGAGATATCGAACTGCAGCTACAGCAAGGCGGCGGCGGTGACGGTGACGGCGCAGTTCTCGGCGGCGGATAGGGAGGCTAGAGTGTTGAGGTACagggagaagaggaagaacCGAAAGTTCGAGAAGACGATTCGTTACGCTTCCAGAAAAGCGTACGCGGAAACGAGGCCAAGGATCAAAGGCAGGTTCGCCAAACGCTCTGACGTGGACCCTCTGGCGGGATACGGCGTCGTTCCGTCGTGTTGA 930 0.6151 MASKLCDSCKSATATLYCRPDAAFLCGACDSKVHAANKLASRHPRVSLCEVCEQAPAHVTCKADAAALCLACDRDIHSANPLASRHERLPVVPFFESVHSVKASSPINFLDDHRFFSDADADVSTEEAEAASWLLPTPKTDLNSSQYLFSESEPVPYIDLDYGQVDPKADQKSSGTADGVVPVQSNFEPFAYGYKYNSTLSQSQSQMSQSVSSSSMEVGVVPDGNTMSEISNCSYSKAAAVTVTAQFSAADREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRSDVDPLAGYGVVPSC 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3552 309 ProSiteProfiles Zinc finger B-box type profile. 1 48 IPR000315 GO:0008270
Ssu1g3552 309 ProSiteProfiles Zinc finger B-box type profile. 44 91 IPR000315 GO:0008270
Ssu1g3552 309 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 2 308 IPR045281 GO:0009909
Ssu1g3552 309 Pfam CCT motif 252 294 IPR010402 GO:0005515
Ssu1g3552 309 SMART bboxneu5 49 91 IPR000315 GO:0008270
Ssu1g3552 309 SMART bboxneu5 1 48 IPR000315 GO:0008270
Ssu1g3552 309 ProSiteProfiles CCT domain profile. 252 294 IPR010402 GO:0005515
Ssu1g3552 309 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 5 2 308 - -
Ssu1g3552 309 Pfam B-box zinc finger 4 47 IPR000315 GO:0008270
Ssu1g3552 309 Pfam B-box zinc finger 47 91 IPR000315 GO:0008270
Ssu1g3552 309 CDD Bbox1_BBX-like 5 48 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3552 Ssu-Chr1 90449364 90450388 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3552 1 308 C2C2-CO-like Transcription Factor Family AT5G24930 53.581 5.65e-112 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Ssu1g3552 zf-B_box 9.8e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3552 - - gmx:100794431 559.296
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3552 1 90449364 90450388 Ssu1g3552 1 90449364 90450388 ECH