Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3551 ATGGGATATCTCAATTCAGTTTTGTCCTCTTCAAGCCAGGTTCATGCTGCAGATGATGCACTTGTGAGCGGTGGGGGTCTAAGTCATAATGGAAAATTCAGCTATGGATATGCTAGCTCTCCTGGCAAGAGATCTTCAATGGAAGATTTTTATGAGACAAGAATTGATGGTGTTAATGGTGAAATCGTTGGCCTTTTCGGAGTTTTTGATGGTCATGGTGGTGTTCGTGCTGCTGAGTATGTCAAGAAAAACCTGTTTAGTAATTTGATCAGTCACCCAAAATTCATTTCTGACACCAAATCAGCAATAGCTGATGCATATAATCATACCGACTCTGAGTTTCTGAAATCAGAAAATAGTCATAACAGAGATGCGGGATCCACTGCTTCCACTGCTATTTTAGTTGGTGACCGCTTGCTTGTTGCAAATGTTGGGGATTCCAGAGCTGTTATATGCAGGGGTGGAAATGCCATTGCTGTTTCTCGAGATCACAAGCCAGACCAAACTGATGAGAGGCAAAGGATTGAAGATGCAGGAGGCTTTGTTATGTGGGCTGGAACTTGGAGAGTTGGAGGTGTTCTTGCTGTTTCTCGTGCGTTCGGTGATAGACTCCTGAAGCAGTATGTTGTTGCTGATCCAGAAATTCAGGAAGAAAAAGTTGACAGCTCCCTCGAGTTTCTTATTCTGGCCAGTGACGGGCTATGGGATGTTGTCTCAAATGAGGAAGCTGTTGCTATGATCAAACCAATTGAGGATTCTGAGGCAGCAGCAAAGAGGCTGATGCAAGAAGCATATCAGAGAGGTAGTGCTGACAATATCACATGTGTTGTTGTTCGTTTCTTGATGAACCAAGGTGCTTCTTCTCATAATAGCTCCGGGGGTAAGCATCCTTCAGTAGAAGGTTTGTGTGCATAG 915 0.4383 MGYLNSVLSSSSQVHAADDALVSGGGLSHNGKFSYGYASSPGKRSSMEDFYETRIDGVNGEIVGLFGVFDGHGGVRAAEYVKKNLFSNLISHPKFISDTKSAIADAYNHTDSEFLKSENSHNRDAGSTASTAILVGDRLLVANVGDSRAVICRGGNAIAVSRDHKPDQTDERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQEEKVDSSLEFLILASDGLWDVVSNEEAVAMIKPIEDSEAAAKRLMQEAYQRGSADNITCVVVRFLMNQGASSHNSSGGKHPSVEGLCA 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3551 304 PANTHER PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE TYPE 2C 3 301 - -
Ssu1g3551 304 SUPERFAMILY PP2C-like 28 280 IPR036457 -
Ssu1g3551 304 ProSitePatterns PPM-type phosphatase domain signature. 65 73 IPR000222 GO:0043169
Ssu1g3551 304 Pfam Protein phosphatase 2C 63 273 IPR001932 -
Ssu1g3551 304 CDD PP2Cc 33 280 IPR001932 -
Ssu1g3551 304 Gene3D - 26 285 IPR036457 -
Ssu1g3551 304 SMART PP2C_SIG_2 45 280 IPR001932 -
Ssu1g3551 304 SMART PP2C_4 24 278 IPR001932 -
Ssu1g3551 304 PANTHER ALPHABET, ISOFORM E-RELATED 3 301 - -
Ssu1g3551 304 ProSiteProfiles PPM-type phosphatase domain profile. 34 280 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3551 Ssu-Chr1 90422674 90426533 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3551 1 290 PP2C-type Phosphatase Gene Family AT4G31750 90.136 0.0 530
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3551 K17506 - gmx:100797070 567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3551 1 90422674 90426533 Ssu1g3551 1 90422674 90426533 ECH