Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3546 ATGGCAACAGCTGAGCATTTTATGGCGACGGATGTTGAATGGGATCCTACTGGAAGATATGTTGCTACTTCGGTGACTTCAGTTCATGAATTGGAAAATGCGTTCAATATATGGACTTTTCGTGGCAAGCTTCTGCACCGGATCCTGAAGGATCATTTCTTTCAGGAAGctgttcaaaattttttgatcATGTCATGCGTAATTTTGGTTCTTCTGAGGTCTGGAAAATCCAGGAATGACATATTCTCCTTTGGCTTCTGCTACGGATTGGTCCTGTAA 279 0.4014 MATAEHFMATDVEWDPTGRYVATSVTSVHELENAFNIWTFRGKLLHRILKDHFFQEAVQNFLIMSCVILVLLRSGKSRNDIFSFGFCYGLVL 92
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3546 92 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED 1 58 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Ssu1g3546 92 Pfam Eukaryotic translation initiation factor eIF2A 1 55 IPR013979 -
Ssu1g3546 92 PANTHER BNACNNG51870D PROTEIN 1 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3546 Ssu-Chr1 90365538 90366228 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3546 1 57 Eukaryotic Initiation Factors Gene Family AT5G27640 80.702 3.04e-30 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3546 K03253 - vvi:100244090 110.923