Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3545 ATGCGTTATGCTCATCCCCAGGATAATCTTACTGACTTTTCACCCGGTGAGAAGTATTTGGTAACCTATAGTAGCCATGAACCAAGTAATCCTCGAGATGAAAATAGGGTtgtgataaatatatttgatgtgAGAACTGGGAAAATAATGAGAGATTTTAAGGGAAGTGCTGATGATATTGCTACTAGAGGTGCTGGGGTTGTCACAGGAGTGTCGTGGCCCATTTTCAGaTGGGGTGGAGGAAAAGGTGACAAATACTTTGCTAGACTAGGTTCATCGATAtacaaaaaacaagaaaagcaCTTACACAGGCTTTGA 318 0.3742 MRYAHPQDNLTDFSPGEKYLVTYSSHEPSNPRDENRVVINIFDVRTGKIMRDFKGSADDIATRGAGVVTGVSWPIFRWGGGKGDKYFARLGSSIYKKQEKHLHRL 105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3545 105 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT B 1 95 - -
Ssu1g3545 105 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED 1 95 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3545 Ssu-Chr1 90364570 90365216 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3545 1 98 Eukaryotic Initiation Factors Gene Family AT5G25780 62.376 2.51e-39 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3545 K03253 - qsu:112039165 168.703