Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3536 ATGGGAATATATCTCAGCACTCCCAAAACTGAAAAGTTTTCTGAAGATGGTGAAAATGATTGTCTTAGATATGGTTTATCATCCATGCAAGGGTGGCGTGCACAAATGGAAGATGCTcaTGCTGCATATACTGATCTGGATGAGTCAACCTCATTTTTTGGTGTCTATGATGGTCATGGAGGTAAAGTGGTTGCAAAGTTTTGTGCCAAGTTTCTTCATCAACAGGTGCTCAAAAGTGAAGCATACTTAGTTGGAGATATAGGAACCTCTCTTCAGAAAGCTTTTTTAAGAATGGATGAGATGATGCGTGGTCAAAGGGGATGGAGGGAATTATCAATATTGGGGGATAAGATCAACAAGTTTACTGGGATGATAGAAGGGTTGATTTGGTCTCCACGAAGCACTGATGGTAATTGCCAAGTTGAGGATTGGGCTTTTGAGGAGGGGCCTCATTCTGATTTTGCTGGACCAACTTCAGGAAGCACTGCTTGTGTTGCAGTTATAAGAAACAACCAACTTCTTGTTGCAAATGCTGGTGATTCACGTTGTGTGATATCTCGGAAGGGTCAGGCATACAATTTGTCTAGAGACCACAAACCTGATCTTGAGATTGAGAAGGAAAGAATCTTAAAAGCCGGTGGTTTTATTCATGCAGGAAGGGTTAATGGCAGTTTAAATCTTGCAAGAGCTATTGGAGACATGGAATTTAAACAGAATAAATTTCTTCCTGCTGAAAAACAAATTGTAACTGCCAATCCAGACATAAACACTGTTGAGCTTTGTGACGAAGATGAATTTGTGGTGTTAGCTTGTGATGGCATATGgGATTGCATGTCAAGTCAACAACTGGTAGATTTTGTTCATGAACAATTGCGCTCGGAAACGAAACTTTCTGCAGTGTGTGAAAGAGTACTCGACCGGTGTTTGGCACCATCAACTGCCGGTGGCGAGGGATGTGACAACATGACCATGATCTTGGTGCAGTTCAAAAAATCTGCTCAGTCCAGTGCACCAGGAGAAGAGCAATCCTCTTCAAACGAACAAGCTGAACCTGAAACACAACTAGAGAGAAGTGAAAGTTAG 1083 0.4164 MGIYLSTPKTEKFSEDGENDCLRYGLSSMQGWRAQMEDAHAAYTDLDESTSFFGVYDGHGGKVVAKFCAKFLHQQVLKSEAYLVGDIGTSLQKAFLRMDEMMRGQRGWRELSILGDKINKFTGMIEGLIWSPRSTDGNCQVEDWAFEEGPHSDFAGPTSGSTACVAVIRNNQLLVANAGDSRCVISRKGQAYNLSRDHKPDLEIEKERILKAGGFIHAGRVNGSLNLARAIGDMEFKQNKFLPAEKQIVTANPDINTVELCDEDEFVVLACDGIWDCMSSQQLVDFVHEQLRSETKLSAVCERVLDRCLAPSTAGGEGCDNMTMILVQFKKSAQSSAPGEEQSSSNEQAEPETQLERSES 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3536 360 ProSitePatterns PPM-type phosphatase domain signature. 52 60 IPR000222 GO:0043169
Ssu1g3536 360 MobiDBLite consensus disorder prediction 330 360 - -
Ssu1g3536 360 Gene3D - 1 330 IPR036457 -
Ssu1g3536 360 SUPERFAMILY PP2C-like 3 330 IPR036457 -
Ssu1g3536 360 ProSiteProfiles PPM-type phosphatase domain profile. 23 329 IPR001932 -
Ssu1g3536 360 CDD PP2Cc 23 329 IPR001932 -
Ssu1g3536 360 SMART PP2C_SIG_2 28 329 IPR001932 -
Ssu1g3536 360 PANTHER PROTEIN PHOSPHATASE 2C 1 341 IPR015655 GO:0004722|GO:0006470
Ssu1g3536 360 MobiDBLite consensus disorder prediction 330 351 - -
Ssu1g3536 360 SMART PP2C_4 12 327 IPR001932 -
Ssu1g3536 360 Pfam Protein phosphatase 2C 23 104 IPR001932 -
Ssu1g3536 360 Pfam Protein phosphatase 2C 156 313 IPR001932 -
Ssu1g3536 360 PANTHER PROTEIN PHOSPHATASE 2C 60 ISOFORM X1-RELATED 1 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3536 Ssu-Chr1 90262582 90268084 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3536 1 341 PP2C-type Phosphatase Gene Family AT2G25070 77.713 0.0 583
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3536 K17499 - gmx:100787778 667.151
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3536 1 90262582 90268084 Ssu1g3536 1 90262582 90268084 ECH
Ssu5g0467 5 9869798 9876194 Ssu1g3536 1 90262582 90268084 PCT