Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3531 aTGGGTGGTTGTTCAAGAACTGCCTCTGCTTCTCTTTTgctccttttccttctttttggcTTCTCTGCAGCTAAGGAACTATTGGTTGGAGGCAAGATAGATGCATGGAAGATTCCATCTTCCGAAGCAGATTCCCTTAATCAATGGGCTGAAAGGTCTCGTTTCAGAGTGGGCGATCATCTTGTGTGGAAATATGAGAGTGGGAAGGACTCAGTTTTGGAAGTAACAAGGGAGGATTATGGTAATTGCAGCACCTCCAACCCCATCAACGAGTACAGTGATGGGAACACTAAGGTGAAGCTTGAGCGTCCTGGGCCATTCTACTTCATCAGTGGAGCAAAGGGGCACTGCGAGAAGGGGCAAAAGTTGATTGTGGTGGTTATGTCTCCAAGACACAGATATACTGCAATTTCTCCAGCACCTTCTCCAGCTGAGTTGGAAGGTCCTGCTGTTGCTCCTACTAGCAGTGCCACAACGTTGCAAGTTGGCCTTGTCACTGCTCTCGGAGTGTTGGCTATGTACGTGGGTTTTCTCATGTGA 540 0.4611 MGGCSRTASASLLLLFLLFGFSAAKELLVGGKIDAWKIPSSEADSLNQWAERSRFRVGDHLVWKYESGKDSVLEVTREDYGNCSTSNPINEYSDGNTKVKLERPGPFYFISGAKGHCEKGQKLIVVVMSPRHRYTAISPAPSPAELEGPAVAPTSSATTLQVGLVTALGVLAMYVGFLM 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3531 179 PANTHER BLUE COPPER PROTEIN 7 172 IPR039391 GO:0009055
Ssu1g3531 179 Gene3D - 23 132 IPR008972 -
Ssu1g3531 179 ProSiteProfiles Phytocyanin domain profile. 25 129 IPR003245 GO:0009055
Ssu1g3531 179 PANTHER EARLY NODULIN-LIKE PROTEIN 3 7 172 - -
Ssu1g3531 179 SUPERFAMILY Cupredoxins 24 128 IPR008972 -
Ssu1g3531 179 CDD OsENODL1_like 25 128 IPR041846 -
Ssu1g3531 179 Pfam Plastocyanin-like domain 36 121 IPR003245 GO:0009055
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3531 Ssu-Chr1 90229146 90230016 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3531 11 163 Phytocyanin Superfamily AT2G25060 58.442 3.77e-63 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3531 - - gmx:100305551 306.605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3531 1 90229146 90230016 Ssu1g3531 1 90229146 90230016 ECH
Ssu5g0474 5 9948372 9949838 Ssu1g3531 1 90229146 90230016 PCT