Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3524 ATGCTGGTGGAAACGCTTGAAGCGAAGCTGCAACGTGTGAAAGAGGAGAATCGTACTCTAAGAGTGACGCTGGAAACTCTGAGCAGCAAATGCGAAAAGCTTCAGTCTCATCTTCAAAAGATCAACAATGCAGAACAAGTGGGCACTGAGTCGCACCAGAGTGGGTCAGTATTAGCAATACCCGAGCTCTCCCTAGCACAAAAGCCATCACAAATCTTTTTCAGAACCCACCCCGAGGACAATAGTTTGATGGTAAGAGATGGTTACCGGTGGAAGAAGTATGGACAGAAGAAGGTTACCAAAGACAATCCTTCGCCTAGAGCTTATTTTAAGTGCTCCCTGGCTCCTAGCTGCCCCGTCAAGAAAAggGTGCAAAGAAGCATACAGGATAGGACTATCCTTGTTGCAACTTACGAAGGAAAGCACAACCATGGTGTTTTTCGTGATTTActcaagccatcatcatctacACCCGAAGGCTCAATAATGGCTAATAATTTACCTGTGACAATCAAACCTAACGACAAAGATACGATGAACATTGACCTTTGCCTATGTGGTTGGGCTCAAACAGATACAAGACTTTGTGAAGAACTGAATCAACAGAACGACCGTGGCAGCAACAGCAAAATTGAAGAATATGTAAGTTCTCTAGTCGAAGATCCTGACTTCACCATACCATTAGCTGAAGCAAGTAAGCAACTGGGTCTCAACCTGAATTTGGGTCTTCCAGAACCTCACTTGTGA 747 0.4311 MLVETLEAKLQRVKEENRTLRVTLETLSSKCEKLQSHLQKINNAEQVGTESHQSGSVLAIPELSLAQKPSQIFFRTHPEDNSLMVRDGYRWKKYGQKKVTKDNPSPRAYFKCSLAPSCPVKKRVQRSIQDRTILVATYEGKHNHGVFRDLLKPSSSTPEGSIMANNLPVTIKPNDKDTMNIDLCLCGWAQTDTRLCEELNQQNDRGSNSKIEEYVSSLVEDPDFTIPLAEASKQLGLNLNLGLPEPHL 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3524 248 PANTHER WRKY TRANSCRIPTION FACTOR 49 3 231 - -
Ssu1g3524 248 Coils Coil 3 44 - -
Ssu1g3524 248 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 3 231 IPR044810 GO:0003700
Ssu1g3524 248 Pfam WRKY DNA -binding domain 87 144 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu1g3524 248 ProSiteProfiles WRKY domain profile. 80 147 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu1g3524 248 SUPERFAMILY WRKY DNA-binding domain 82 146 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu1g3524 248 Gene3D WRKY domain 70 146 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu1g3524 248 SMART WRKY_cls 85 146 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3524 Ssu-Chr1 90163732 90166541 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3524 62 231 WRKY Transcription Factor Family AT1G80840 40.331 6.56e-37 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Ssu1g3524 WRKY 1.6e-21 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3524 - - gmx:121175041 358.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0481 5 10076711 10078447 Ssu1g3524 1 90163732 90166541 PCT