Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3523 ATGGAACCAACGTGCGTCGACACTTCGCTCAACCTTAACGTTGTTCCCTCTCCGCACATCGACCTTGCGGCAGAAGTTTTGGTTGAAGAGTTGCGGCGTCTAAGCAGCGAGAACAAGAGGTTAACTGAGACGCTGAACCACGTGTGCGAGAGCTATGTTGCTTTGCAGAAACATTTGGGTGGATTCAGCCAAGTGAGGAACGGAAATTTTGATAAAGAAGTGATGCCATCGCGGAAGAGAAAGGCCGAGAGTGAGAACTGTGTGAATCTGCTTAGTATTAACACCTATACTGAGTGCAGCACTGCCACTGAGGAAGAGACATTCAAAAGGCCCAAGCATAGCACCTCGCCCAACGTTTCCAAAGTTTTTGTACGGACGGATGCATCTGATGCCAGCTTATATGTGAGGGACGGATATCAGTGGAGAAAGTATGGTCAAAAAGTCACCAGAGATAACCCATCTCCTAGGGCTTACTTCAAGTGTTCTTATGCCCCAGGCTGCCCAGTGAAGAAGAAGGTGCAAAGAAGTGTAGAAGACCCAACTGTGTTGGTAGCAACATACGAAGGAGAGCACAACCATGGCCAACATCAAACGGAAGTATCAGTGAATTCAAGCCAAATTAGTGAAACCACTGTGGGTTCAGTACCTGCTAGTTCCTCACCCATGAATCAGAGTGCAGGTCCAATTGTAACGCTTGACTTGGTCCAGTCGAGAATGGTTGACATTAATGCCCCAAACTCATCTATCCAGCAGTTTTTGGTTGAACAAATGGCTACTTCTTTGACTAGAGATCCTAATTTCACAGCCGCACTTGCTACTGCCATCTCTGGAAGATTTCTAGACGATACTAATTCTATGGGAAAACGTTGA 870 0.4655 MEPTCVDTSLNLNVVPSPHIDLAAEVLVEELRRLSSENKRLTETLNHVCESYVALQKHLGGFSQVRNGNFDKEVMPSRKRKAESENCVNLLSINTYTECSTATEEETFKRPKHSTSPNVSKVFVRTDASDASLYVRDGYQWRKYGQKVTRDNPSPRAYFKCSYAPGCPVKKKVQRSVEDPTVLVATYEGEHNHGQHQTEVSVNSSQISETTVGSVPASSSPMNQSAGPIVTLDLVQSRMVDINAPNSSIQQFLVEQMATSLTRDPNFTAALATAISGRFLDDTNSMGKR 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3523 289 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 1 280 - -
Ssu1g3523 289 ProSiteProfiles WRKY domain profile. 130 196 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu1g3523 289 SMART WRKY_cls 135 195 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu1g3523 289 SUPERFAMILY WRKY DNA-binding domain 133 195 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu1g3523 289 Gene3D WRKY domain 118 195 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu1g3523 289 Coils Coil 24 44 - -
Ssu1g3523 289 Pfam WRKY DNA -binding domain 137 193 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu1g3523 289 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 1 280 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3523 Ssu-Chr1 90147612 90149031 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3523 6 279 WRKY Transcription Factor Family AT1G80840 45.675 7.86e-75 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Ssu1g3523 WRKY 5.2e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3523 - - gmx:100127373 439.113