Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3522 ATGGAAGAGTGTCAGACGGTGTTTGGGAAGTACGAGATGGGGAGGCTTCTGGGGAAGGGCACGTTTGCGAAGGTGTATTACGGGAAGCAAATAAGCACGGGCGAGAGCGTGGCCATCAAGGTAATCAAGAAAGAGCAGGTGAGGAAGGAAGGGATGATGGAACAGATCAAACGCGAGATCTCCGTGATGCGTTTGGTGCGACACCCAAACGTGGTGGAGCTGAAAGAAGTGATGGCCACGAAGACAAAAATCTTCTTCGTGATGGAATACGTGCGCGGCGGCGAGCTCTTCGCGAAGATCTCCAGAGGCAAGCTGAAAGAAGATCTCGCCCGTAAATACTTCCAGCAACTAATCAGCGCCGTTGATTACTGCCACAGCAGGGGAGTCTCCCACCGCGACCTGAAGCCCGAGAATTTACTCCTCGACGACGACGGAAACCTCAAAATCTCCGACTTCGGACTCTCCGCGCTGCCGGAGCAGCTCCGCTACGATGGACTCCTCCACACCCAGTGCGGCACCCCTGCCTACGTGGCACCCGAGGTCCTCAGAAAAAAAGGCTACGACGGCTCCAAAACCGATATCTGGTCATGCGGCGTCGTCTTGTACGTTCTCCTCGCCGGCTTCCTTCCTTTCCAGCACGAGAATCTCATGACCATGTATAACAAGGTCCTCAGAGCCGAATTCGAGTTCCCACCGTGGTTCTCGCCCGACTCCAGGAGATTGATCTCGAAGATTCTTGTGGCGGACCCGGCAAAGCGAATCACGATTCCCGCAATAACGCGCGCGCCCTGGTTCCGGAAAGGGTTTTCCGCCCCGGACACGTGTCCGCTGGAGAAACAAGAGGCGGTTGCGGAGGAAGGTTCCAAGGTGCCCAAGTTCTTCAACGCGTTTGAGTTTATTTCTTCGATGTCGTCGGGCTTCGATCTCTCGGGCCTGTTTGAGAGTAAGAGGAAGACGGCCGCGGTGTTCACCTCGAGGTGTTCGGCGGCGGCGATTGTGGCCAAGATCGTGGCGGCGGCCCGGGGGTTGAGTTTCAGGGTGGCCGAGGTGAAGGACTTCAGGGTGAGGCTGCAGGGGACGGCGGAGGGGCGGAAGGGCAGGCTGGCGGTGACGGCCGAGGTGTTCGAGGTCGCGCCGGAGGTCGCCGTCGTGGAGTTCTCGAAGGCCGCCGGGGACACCTTGGAGTACGCCAAGTTTTGCGAGCAGGATGTGAGGCCCGCGCTGAAGGACATTGTTTGGACGTGGCAAGGGGATGCCACGTGTACTGCTAACGTCCCCGCCTGTCACGGGGAGGAGCATCAAAAGCAGGGTGGTGGGCGGCATACTGCATGTTCCACGGACATACATGCTTCAAATTGCATGTGA 1365 0.5802 MEECQTVFGKYEMGRLLGKGTFAKVYYGKQISTGESVAIKVIKKEQVRKEGMMEQIKREISVMRLVRHPNVVELKEVMATKTKIFFVMEYVRGGELFAKISRGKLKEDLARKYFQQLISAVDYCHSRGVSHRDLKPENLLLDDDGNLKISDFGLSALPEQLRYDGLLHTQCGTPAYVAPEVLRKKGYDGSKTDIWSCGVVLYVLLAGFLPFQHENLMTMYNKVLRAEFEFPPWFSPDSRRLISKILVADPAKRITIPAITRAPWFRKGFSAPDTCPLEKQEAVAEEGSKVPKFFNAFEFISSMSSGFDLSGLFESKRKTAAVFTSRCSAAAIVAKIVAAARGLSFRVAEVKDFRVRLQGTAEGRKGRLAVTAEVFEVAPEVAVVEFSKAAGDTLEYAKFCEQDVRPALKDIVWTWQGDATCTANVPACHGEEHQKQGGGRHTACSTDIHASNCM 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3522 454 Pfam NAF domain 291 348 IPR004041 GO:0007165
Ssu1g3522 454 SUPERFAMILY Protein kinase-like (PK-like) 7 286 IPR011009 -
Ssu1g3522 454 Gene3D Kinase associated domain 1, KA1 289 414 - -
Ssu1g3522 454 Gene3D Phosphorylase Kinase; domain 1 1 90 - -
Ssu1g3522 454 CDD CIPK_C 295 409 - -
Ssu1g3522 454 ProSiteProfiles Protein kinase domain profile. 11 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g3522 454 SMART serkin_6 11 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g3522 454 CDD STKc_SnRK3 10 264 - -
Ssu1g3522 454 Pfam Protein kinase domain 11 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g3522 454 PANTHER - 1 426 - -
Ssu1g3522 454 ProSiteProfiles NAF domain profile. 289 314 IPR018451 GO:0007165
Ssu1g3522 454 ProSitePatterns Protein kinases ATP-binding region signature. 17 44 IPR017441 GO:0005524
Ssu1g3522 454 Gene3D Transferase(Phosphotransferase) domain 1 91 271 - -
Ssu1g3522 454 ProSitePatterns Serine/Threonine protein kinases active-site signature. 129 141 IPR008271 GO:0004672|GO:0006468
Ssu1g3522 454 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 25-RELATED 1 426 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3522 Ssu-Chr1 90092897 90094944 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3522 2 439 CBL-interacting serine-threonine protein kinases AT5G25110 67.108 0.0 643
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Ssu1g3522 Pkinase 1.7e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3522 - - gmx:100817520 786.178