Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3517 ATGGCAAAGTGTCACCGGAACAACGTCGGATCCATCGCTCTCGACCACCGCCACTCTGCCAAAAATGCCACCGCCGGCGGCCACTTCCGCTTACTCCGCCGCATGATCTTCGACGCCGTCAGCTGCGGCGGCACCTCTCGCTACCGGTATCGCCAGCGCGGCGGCGACAACGGCAACGGCGGTGACTTCAGCTCGGCGGAGAGCCACagagagaaggaggaggagaggTCGGAGAAGCTATCGGATCTGCTGAACGCAGTGGAGAGCGAAACGGAGGCGGAGgcgaagaagaaggaagaggcATTGACGGAGCTGAAGCGAGTGGTGACGGAGCTGCGTGGAGAAGACTTCACGAACCGGCAAATAGCGGCGGCGAGCGTGAGGTCACTCGCGAAGGAAGATTCGGAAGCGAGAGCGAATCTGGCAATGCTCGGAGCAATTCCTCCTCTCGTCGGAATGCTCGATTCGGAAGACGCTCATTCTCAAATCGCTTCGCTCTACGCTTTACTCAATCTCGGAATCGGCAACGATGCAAATAAAGCGGCTATAGTGAAAATTGGCGCTGTTCACAAGATGCTGAAGCTGATTGAATCGAGCGGTTCAGATTCGTCGGCGTCTGAAGCGATTGTTGCGAATTTCCTCGGATTGAGTGCTTTGGATTCGAATAAACCGATAATTGGATCCTCCGGTGCAATACCGTTCCTTGTTAGAACCCTAAAGAATTTAGATGATAGTAAAATCGAGTCCAAATCGCAAGTGAAGCAAGATGCTCTGCGCGCTTTGTACAATCTTTCGATATTTCAGAGCAATGTTTCAGTGATATTGGAAACTGATTTGGTTCGGTTTTTAGTGAACGCGATTGGGGACATGGAAGTGAGCGAGAGGAGTCTCGCGATTCTGAGCAATATAGTGTCGACTCCAGAGGGTAGAAAGGCTATTAGTGGTGTTAAGGATGCGATTCCGATTCTTGTGGATGGGTTGAGTTGGACGGATTCGCCAGAGTGCCAAGAGAAGGCGTCGTACGTTTTGATGGTTATGGCACACAAAGCGTACGGTGACAGGCGGGTGATGATAGAGGCAGGGATTGTGTCGTCGCTGCTTGAGTTGACGCTTGTGGGCACCACGTTGGCTCAGAAGAGGGCATCGAGGATTTTGGAGTGTTTGAGGATGGACAAGGGGAAGCAAGTTTCTGGGAGCTACGGTGGGAACTTGGGCGTGTCTGCTCCTATCTGTGGGTCTACGTCGAAGGGTGGTTTGGTGGAGGAAGAAGATGGGGTGATGAGTGAGGAAAAGAAAGCGGTGAAGCAGTTAGTGCAGCAGAGTTTGCAGAACAATATGATGAAAATTGTGAAGAGGGCCAACTTGCGTCAGGATTTGGTTCCATCTGGCCATTTTGCTTCACTCACTTCGAGTTCCACTTCCAAGAGCCTGCCATTTTGA 1440 0.5062 MAKCHRNNVGSIALDHRHSAKNATAGGHFRLLRRMIFDAVSCGGTSRYRYRQRGGDNGNGGDFSSAESHREKEEERSEKLSDLLNAVESETEAEAKKKEEALTELKRVVTELRGEDFTNRQIAAASVRSLAKEDSEARANLAMLGAIPPLVGMLDSEDAHSQIASLYALLNLGIGNDANKAAIVKIGAVHKMLKLIESSGSDSSASEAIVANFLGLSALDSNKPIIGSSGAIPFLVRTLKNLDDSKIESKSQVKQDALRALYNLSIFQSNVSVILETDLVRFLVNAIGDMEVSERSLAILSNIVSTPEGRKAISGVKDAIPILVDGLSWTDSPECQEKASYVLMVMAHKAYGDRRVMIEAGIVSSLLELTLVGTTLAQKRASRILECLRMDKGKQVSGSYGGNLGVSAPICGSTSKGGLVEEEDGVMSEEKKAVKQLVQQSLQNNMMKIVKRANLRQDLVPSGHFASLTSSSTSKSLPF 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3517 479 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 1 479 - -
Ssu1g3517 479 SUPERFAMILY ARM repeat 104 391 IPR016024 -
Ssu1g3517 479 MobiDBLite consensus disorder prediction 48 81 - -
Ssu1g3517 479 Gene3D - 65 248 IPR011989 -
Ssu1g3517 479 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 230 265 IPR000225 GO:0005515
Ssu1g3517 479 MobiDBLite consensus disorder prediction 65 81 - -
Ssu1g3517 479 PANTHER ARMADILLO/BETA-CATENIN-LIKE REPEAT PROTEIN 1 479 - -
Ssu1g3517 479 SMART arm_5 267 305 IPR000225 GO:0005515
Ssu1g3517 479 SMART arm_5 219 266 IPR000225 GO:0005515
Ssu1g3517 479 SMART arm_5 134 174 IPR000225 GO:0005515
Ssu1g3517 479 SMART arm_5 176 218 IPR000225 GO:0005515
Ssu1g3517 479 SMART arm_5 306 348 IPR000225 GO:0005515
Ssu1g3517 479 Gene3D - 249 399 IPR011989 -
Ssu1g3517 479 Coils Coil 70 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3517 Ssu-Chr1 89920844 89922424 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3517 77 389 U-box Gene Family AT2G23140 33.333 2.38e-33 131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3517 - - gmx:100796229 711.449
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0521 5 11263257 11266019 Ssu1g3517 1 89920844 89922424 PCT