Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3512 ATGAGTAGCTTGGTGGAGAGGCTTCGTGTAAGATCAGATCGCAGGCCAATTTATAATATTGACGAGTCAGATGATGATGCTgattttttgccaaaaaaatcAGGCACAACTCAGGAAAAGTTAGAGAGGATAGTGAGAAGTGATGCGAAAGAGAATTTATGTCAAGCCTGtggagaaaatgaaaatcttgTGAGCTGTGAAACTTGCACATATGCTTACCATCCTAGATGCTTACTTCCACCCCTTAAAGGTCCCCTTCCAGACAATTGGAGGTGCCCTGAATGTGTTAGCCCACTTAATGATATTGATAAGATATTAGATTGTGAGATGCGCCCTACTACAGCGGCTGACAATGATGCCACGAAATTAGGGTCAAAGCAAATTTTTGTCAAACAATACCTTGTTAAGTGGAAGGGCCTATCATATTTGCATTGCACATGggTGCCGGAGAAAGAGTTTTTGAAAGCATTTAAGACTCATCCTCGTCTAAAGACCAAGGTGAACAACTTCCATCAAAAAATGGCATCTGTTAATACTTCTGATGAAGACTTCGTTGCCATTCGACCTGAATGGACTACAGTTGATCGAATACTTGCATGCAGGGGTGATGATGATGAGAGGGAATATCTTGTGAAGTGGAAGGAGCTTCCATATGATGAATGCTATTGGGAGTTTGAGTCAGATATTTCTGCATTTCAGCCAGAGATAGAAAGATTCAATAGATTTCGGTCTAGATCCAGCAAATTTTCTTCCAGTAAACAAAAAAACAGTGTTAAGGATGATACTGAATTGAAGAAACAGCAGAAAGAATTTAAACATTATGAACATAGCCCTGAGTTTCTTTCAGGTGGTACATTACACCCATATCAGCTTGAAGGATTGAACTTCTTACGATTCTCTTGGTCCAAGCAGACTCATGTTATACTTGCTGATGAAATGGGACTTGGCAAAACCATACAAAGTATTGCTTTCTTAGCATCCCTTTTTGGAGAGGGTGTCTCCCCACATTTGGTGGTTGCTCCACTTTCAACTTTGCGAAACTGGGAACGTGAATTCGCAACATGGGCACCTCAAATGAATGTTCTAATGTATGTTGGATCTGCCCAAGCTCGTAGTGTTATAAGAGAGTATGAATTTTACTTTCCAAAAAAACAGAAGaagatcaagaaaaagaaatctgGTCAGATAATTAGTGAAAGCAAGCAAGACAGGATTAAGTTTGATGTTCTTTTGACATCATATGAGATGATCAACTTTGACACAGCATCACTAAAACCTATAAAATGGGAGTGTATGATAGTAGATGAAGGTCACCGTCTCAAAAATAaggattcaaaattattttcttcattgaaGCAATATTCTAGCAGACATCGTGTTCTCTTGACAGGAACTCCTCTTCAGAACAACTTGGATGAACTTTTTATGCTTATGCACTTCCTTGACGCTGGGAAGTTTGGAAGTTTAGAGGAGTTCCAGGAAGAGTTTAAGGATATCAATCAAGAGGAACAGATTTCAAGGCTTCATAAAATGTTGGTCCCGCATCTCCTGAGAAGAGTGAAGAAAGATGTCATGAAGGAACTACCTCCTAAAAAGGAACTTATTCTACGTGTTGAATTGAGCAGCAAACAGAAAGAATATTATAAGGCAATTTTGACCCGTAATTATCAGATATTAACTCGTCGTGGTGGTGCACAGATTTCTCTTATCAATGTTGTTATGGAACTGCGTAAGCTCTGTTGTCATCCTTACATGTTAGAAGGAGTTGAACCAGATATTGATGATGCAAAAGAAGCATTCAAACAGCTGCTGGAATCATCGGGGAAGTTGCAATTGCTGGACAAGATGATGGTGAAGCTTAAAGAGCAAGGACATAGAGTCCTCATATATTCCCAATTTCAGCACATGCTGGACTTGCTTGAAGATTACTGTACTTACAAGaaatggCATTATGAAAGGATTGATGGCAAGGTTGGTGGAGCTGAAAGACAAGTTCGGATAGATCGTTTCAATGCCAAAAATTCTTCCAGATTTTGCTTTCTTCTTTCTACTAGGGCTGGGGGACTGGGGATAAACCTTGCAACTGCTGACAcagttattatatatgatagTGATTGGAATCCTCATGCTGATTTACAAGCTATGGCTAGAGCTCATCGACTTGGACAAACTAACAAGGTGTTAATTTATAGGCTTATAACACGAGGAACTATTGAAGAAAGGATGATGCAGATGACTAAGAAGAAAATGGTGTTAGAACACCTAGTTGTAGGGAGGCTAAAGGCTCAAAACATCAACCagGAAGAGTTGGATGACATCATAAGATATGGCTCAAAGGAGTTATTTGCAGATGAGAATGATGAAGCAGGCAAATCCCGCCAAATTCATTATGATGCTGCTGCTATTGATAGATTGCTGGATCGTGATCAAGTTGGAGATGAAGAGGCTACTTTggatgatgaagatgaagatggatTTCTGAAGGCCTTTAAGGTTGCAAATTTTGAGTATGTTGATGAGGCCGAGGCTGCAGCAGAGGAGGCAGCACAAAAAAGAGCCATGGAGACACTGAACAGTTCAGAAAGAACACATTACTGGGAGGAGTTGTTAAGAGATAAGTATCAAGAGCATAAAGTTGAGGAGTTTAATGCCTTGGGCAAGGGGAAGCGAAACCGGAAGCTGATGGTTTCCGTGGAGGAAGATGACCTGGCTGGTCTGGAAGATGTAAGCTCTGATGGTGAAGATGATAATTATGAAGCAGAGCTTACTGATGGTGATTCAAATTCCACTGGAACTACTACTGCTAGAAggccttataaaaaaaaagcacgTAcaGCAGATAGCACAGAGCCACTTCCTCTGATGGAAGGTGAAGGAAAAGCATTCAGAGTTCTTGGTTTTAATCAAAATCAGAGGGCTGCATTTGTGCAAATTTTGATGAGGTTTGGGGTTGGTAATTTTGATTGGAAGGAGTTTACTTCCCGCATGAAACAGAAGACTTATGAAGAAATCAAAGActaTGGAACCCTTTTCTTGTCTCATATTGCTGAAGATATAACTGATTCCTCTACATTCACAGATGGTGTTCCAAAAGAAGGACTCCGAATCCAAGATGTACTTGTTAGGATTGCAGTCCTGCTCTTGATAAGGGACAAGGTGAAGTTTGCGTCACAACATCCTCAAACTCCATTGTTTTCAGATGACATCTTATTACGCTATCCAGGTTTGAAGGGTGCAAAGATATGGAAGGAGGAGCATGATTTGGTTTTGTTGCGTGCCGTTTTGAAGCATGGTTATGGACGGTGGCAAGCTATTGTTGATGATAAGGATCTGAAGATTCAGGAGGTCATCTGTCAGGAGTTGAATCTTCCCTTTATAAACTTACCAGTTCCAGGACAAGTTGGCTCTCAGGCACAAAATGGTACAAATTTGACAAATGCAGAAGTACCCAACAGTCAATCCAGGGAAAATGGTGGGAGTGATATAGCAGCTGAAGGTGCACAAGGTTCTGGTGATGCTAGGAACCAACCACAGTTATATCAAGACTCCTccatattatatcattttagaGACATGCAGAGAAGACAGGTCGAGTTTATTAAAAAGAGGGTTCTTCTCTTGGAAAAAGGGCTCAATGCTGAGTACCAGAAAGAATACTTTGGTGATCCAAAAACAAATGAAGTAACAAATGAAGAACTTAAAAGTGAACCTAAGGCTACTAATTGTCCAAGTTATAAATTAGGGGACACTGACACGCAAATGATTGATCAACTGCCGCAAGTAGAAACAATAGCTTCAGAAGAAATTTCGGCTGCTTGTGATAGTGATCCCAATCAATTGGAGTTAGTTCGTCTTTACAATGAGATGTGCAAGGTAGTGGAGGAAAACCCCATGGACTTAATTCAAACTTCTTTGGCAAGAGAACCAGCAGAGCTCAATGTAGTGAAGAATTTCCCTCCACTAGAAACCCTTTGTGAAGACATTAACAGAATGCTAACACCCACACAAGAACAACCTGTTGCAGAAATGCCAATATCGAATTCAGATAACAAATCAGAGGCTATGTCACACGGTGAAATTTTGGGCTCCAAATCAGTGCCAAACCCTCGAGATGCCTGCAAAGCTGAAGATTCAGCAGACAATGAGAGTAAAGATGTGATAATAGAATCTGAAGCTATAAAAGAAAGCTGCTCAAGCCTGGTAGAAGAGAAGAATGAAACACCGACTCTTCCAGAGAAAGAGATAAGTAATACAGAAATGGATGAAACTATGACTGATGCTGAGTTGAATGAAAACCCAGAGAAATCTGATGCTGGGGTCGCTGTATTGGATGGTTAA 4338 0.3903 MSSLVERLRVRSDRRPIYNIDESDDDADFLPKKSGTTQEKLERIVRSDAKENLCQACGENENLVSCETCTYAYHPRCLLPPLKGPLPDNWRCPECVSPLNDIDKILDCEMRPTTAADNDATKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKTHPRLKTKVNNFHQKMASVNTSDEDFVAIRPEWTTVDRILACRGDDDEREYLVKWKELPYDECYWEFESDISAFQPEIERFNRFRSRSSKFSSSKQKNSVKDDTELKKQQKEFKHYEHSPEFLSGGTLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGEGVSPHLVVAPLSTLRNWEREFATWAPQMNVLMYVGSAQARSVIREYEFYFPKKQKKIKKKKSGQIISESKQDRIKFDVLLTSYEMINFDTASLKPIKWECMIVDEGHRLKNKDSKLFSSLKQYSSRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHKMLVPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIDDAKEAFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYCTYKKWHYERIDGKVGGAERQVRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVLIYRLITRGTIEERMMQMTKKKMVLEHLVVGRLKAQNINQEELDDIIRYGSKELFADENDEAGKSRQIHYDAAAIDRLLDRDQVGDEEATLDDEDEDGFLKAFKVANFEYVDEAEAAAEEAAQKRAMETLNSSERTHYWEELLRDKYQEHKVEEFNALGKGKRNRKLMVSVEEDDLAGLEDVSSDGEDDNYEAELTDGDSNSTGTTTARRPYKKKARTADSTEPLPLMEGEGKAFRVLGFNQNQRAAFVQILMRFGVGNFDWKEFTSRMKQKTYEEIKDYGTLFLSHIAEDITDSSTFTDGVPKEGLRIQDVLVRIAVLLLIRDKVKFASQHPQTPLFSDDILLRYPGLKGAKIWKEEHDLVLLRAVLKHGYGRWQAIVDDKDLKIQEVICQELNLPFINLPVPGQVGSQAQNGTNLTNAEVPNSQSRENGGSDIAAEGAQGSGDARNQPQLYQDSSILYHFRDMQRRQVEFIKKRVLLLEKGLNAEYQKEYFGDPKTNEVTNEELKSEPKATNCPSYKLGDTDTQMIDQLPQVETIASEEISAACDSDPNQLELVRLYNEMCKVVEENPMDLIQTSLAREPAELNVVKNFPPLETLCEDINRMLTPTQEQPVAEMPISNSDNKSEAMSHGEILGSKSVPNPRDACKAEDSADNESKDVIIESEAIKESCSSLVEEKNETPTLPEKEISNTEMDETMTDAELNENPEKSDAGVAVLDG 1445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3512 1445 Pfam CHD subfamily II, SANT-like domain 933 1067 IPR009462 GO:0003677|GO:0006338
Ssu1g3512 1445 MobiDBLite consensus disorder prediction 1370 1420 - -
Ssu1g3512 1445 Gene3D - 529 753 IPR027417 -
Ssu1g3512 1445 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 521 777 IPR027417 -
Ssu1g3512 1445 SMART ultradead3 282 495 IPR014001 -
Ssu1g3512 1445 Pfam Chromo (CHRromatin Organisation MOdifier) domain 102 157 IPR023780 -
Ssu1g3512 1445 Pfam Chromo (CHRromatin Organisation MOdifier) domain 193 241 IPR023780 -
Ssu1g3512 1445 Coils Coil 838 858 - -
Ssu1g3512 1445 CDD CD2_tandem 190 239 - -
Ssu1g3512 1445 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 612 773 IPR001650 -
Ssu1g3512 1445 PANTHER CHD3-TYPE CHROMATIN-REMODELING FACTOR PICKLE 5 1056 - -
Ssu1g3512 1445 SMART PHD_3 53 96 IPR001965 -
Ssu1g3512 1445 CDD SF2_C_SNF 607 733 - -
Ssu1g3512 1445 ProSiteProfiles Rubredoxin-like domain profile. 61 105 IPR024934 GO:0005506
Ssu1g3512 1445 MobiDBLite consensus disorder prediction 1137 1176 - -
Ssu1g3512 1445 MobiDBLite consensus disorder prediction 904 953 - -
Ssu1g3512 1445 Gene3D - 278 528 IPR038718 -
Ssu1g3512 1445 Gene3D - 1037 1215 - -
Ssu1g3512 1445 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 5 1056 - -
Ssu1g3512 1445 ProSiteProfiles Chromo and chromo shadow domain profile. 100 182 IPR000953 -
Ssu1g3512 1445 SMART DUF1087_2 839 905 IPR009463 -
Ssu1g3512 1445 MobiDBLite consensus disorder prediction 1335 1354 - -
Ssu1g3512 1445 Pfam CHD subfamily II, DUF1087 844 902 IPR009463 -
Ssu1g3512 1445 ProSitePatterns Zinc finger PHD-type signature. 54 95 IPR019786 -
Ssu1g3512 1445 Gene3D - 98 188 - -
Ssu1g3512 1445 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 44 97 IPR013083 -
Ssu1g3512 1445 ProSiteProfiles Chromo and chromo shadow domain profile. 192 254 IPR000953 -
Ssu1g3512 1445 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 239 519 IPR027417 -
Ssu1g3512 1445 SMART chromo_7 99 162 IPR000953 -
Ssu1g3512 1445 SMART chromo_7 190 244 IPR000953 -
Ssu1g3512 1445 CDD CD1_tandem 98 171 - -
Ssu1g3512 1445 Pfam SNF2-related domain 306 586 IPR000330 GO:0005524|GO:0140658
Ssu1g3512 1445 Gene3D - 189 241 - -
Ssu1g3512 1445 SMART DUF1086_2 910 1070 IPR009462 GO:0003677|GO:0006338
Ssu1g3512 1445 Pfam Helicase conserved C-terminal domain 609 722 IPR001650 -
Ssu1g3512 1445 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 298 484 IPR014001 -
Ssu1g3512 1445 SMART helicmild6 638 722 IPR001650 -
Ssu1g3512 1445 ProSiteProfiles Zinc finger PHD-type profile. 51 98 IPR019787 -
Ssu1g3512 1445 Pfam PHD-finger 54 96 IPR019787 -
Ssu1g3512 1445 MobiDBLite consensus disorder prediction 1137 1159 - -
Ssu1g3512 1445 SUPERFAMILY Chromo domain-like 66 177 IPR016197 -
Ssu1g3512 1445 SUPERFAMILY Chromo domain-like 178 242 IPR016197 -
Ssu1g3512 1445 MobiDBLite consensus disorder prediction 904 922 - -
Ssu1g3512 1445 MobiDBLite consensus disorder prediction 1335 1445 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3512 Ssu-Chr1 89803225 89830373 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3512 308 783 RAD5 or RAD16-like Gene Family AT1G02670 23.519 1.54e-29 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Ssu1g3512 SNF2_N 4.8e-65 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3512 K11643 - gmx:100790230 2681.36