Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3510 atgacCGTAGAAAAGAGAATGAATGATTCCGGTGATGAGTTTCCCATCGGAATGCGTGTTCTTGCCGTCGACGATGATCCAACTTGCCTCTTGGTTTTGGAAACTTTCCTCCGAAGATGTCAATATCATGTAACCACGACTAATCAAGCAATAACGGCGTTGACGCTGTTGAGAGAACACAAAGACAGGTTTGACCTGGTAATCAGTGATGTGCACATGCCAGACATGGATGGATTTAAGCTGCTTGAGCTAGTGGGACTTGAGATGGACCTTCCTGTCATAATGTTGTCTGCAAATGGTGATACGAGGCTGGTGATGAAAGGGATTTCTCACGGAGCCTGTGATTATCTGCTGAAACCCGTGAGAATGGAGGAGCTCAAGAACATTTGGCAGCATGTAATCAGGAGGAAGAAGTTTGACTCAAAGGAGAAGAACAAAACCAGCAACCATGACAAACCTACTTCTGATAGTGGCAATGGACTAGGGTCATCAGGAGCAGGAAATTCAGATCAAAATGAGAAGCTGACTAAAAAGAGGAAGGAtcaagatgaagatgaagatgaggaGCAGGAGAATGATAATGACAATGAGGACCCATCAACCCAGAAGAAGCCTCGGGTTGTTTGGTCCGTGGAGCTGCACCGCAAGTTTGTTGCTGCTGTTAATCAGCTAGGCATTGACAAGGCTGTACctaaaaaaattcttgattTGATGAATGTTGAAAAGCTTACAAGGGAGAATGTGGCCAGCCATCTCCAgAAATATAGGCTTTATCTGAAAAGAATTAGCTGCGTGGCTAACCAACAGGCTAATATGGTGGCGGCCTTAGGGGGTGCAGATCCATCCTATTTGAGAATGAGTGCTGTAAGTGGTGTTGGACATTTACAAACATTAAGTAGTTCTGGACAGCTTCATAACAATGCTTTCAGATCCTTTCCACCTAGTGGGATAATTAATAGATTGAACACTCCTGCTGGTTTGAATGTGCATGGATTTCCTTCTGGAGTACTTCAGTTGAGTCAATCACAAAATTTAAGCAACAACAATGATCGTCATAAGTTCCAGTCAGCCATGGTCCCTGTTAATCAGAATGGCATTCAGCGAATGCCAATGTCTGTAGGGCTTGATCAATTGCAAAACAATAAGGGTGTTATTTCTGTTCACTTTGATGCCAAAACTTTTCCCATCTCAAATAAACTCCCTGATCTAagaacaaaagtaattacctcTGGCTCTCACACTCCAGATCTGGGTATCTCAAACAATGCCTTGACTTTGGAACCACGCCCTCAAGGCACACAAGGGAGTGTAAGATATGAAACTTTATCTTCTTCAGCAGCCTCTCAAAATTCAGAAATTTCTTTGTCTTTGCTGGATCAAGGTAGATATAGTGATAATTGGTCAAGTGCTGTGCAGCCGTCTGTGATCCAGACAAACTCTTACCCTCCAAGTGAATGTTTTAGACAGACTAATATATGTCCTACAGATAACATGGCTTCTGTACCCTTGCAAGGTGGGAATTCAAGTGGTCCATCCATCCCTTCAGTGTCCGGGCAATCCCATGATTCAATTGCAGATATGCACTCTGAAGGTGTGATTTTTACTAACAGACCTGGGCTTATAAGCAGTAATGTGCCATTTCAAGGGTGGGATGACCATAGTCAGGATGCTACTCAccattcaaatattatattcgAATCAATAAACTCACTGACTCCAGTTAATGGTGCTGCTTTTCCAGCAGGCCATGCTGCAACAAACTCAACTTTACACAGAAACTTGGACTTCAACTTTTGTGATCCTTTACAAATGAAGCATGGTGGGTTTGTGGAGTTAACTGAAGAGACCTCATTGAAACATCAGGGGAATATCATGAACCAGCAGAAGTCTCAACAAAGTCATTTCTCTAATAATCTTGGTTCACTGGAAGATTTGGTCAGTTCAATGATGAAACAGgagaaagataaaatgaaattattgaatggaGACCTCATTTGCAATAATTACTCTGGTGGTGTATCTATGTGA 2028 0.4053 MTVEKRMNDSGDEFPIGMRVLAVDDDPTCLLVLETFLRRCQYHVTTTNQAITALTLLREHKDRFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSANGDTRLVMKGISHGACDYLLKPVRMEELKNIWQHVIRRKKFDSKEKNKTSNHDKPTSDSGNGLGSSGAGNSDQNEKLTKKRKDQDEDEDEEQENDNDNEDPSTQKKPRVVWSVELHRKFVAAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQKYRLYLKRISCVANQQANMVAALGGADPSYLRMSAVSGVGHLQTLSSSGQLHNNAFRSFPPSGIINRLNTPAGLNVHGFPSGVLQLSQSQNLSNNNDRHKFQSAMVPVNQNGIQRMPMSVGLDQLQNNKGVISVHFDAKTFPISNKLPDLRTKVITSGSHTPDLGISNNALTLEPRPQGTQGSVRYETLSSSAASQNSEISLSLLDQGRYSDNWSSAVQPSVIQTNSYPPSECFRQTNICPTDNMASVPLQGGNSSGPSIPSVSGQSHDSIADMHSEGVIFTNRPGLISSNVPFQGWDDHSQDATHHSNIIFESINSLTPVNGAAFPAGHAATNSTLHRNLDFNFCDPLQMKHGGFVELTEETSLKHQGNIMNQQKSQQSHFSNNLGSLEDLVSSMMKQEKDKMKLLNGDLICNNYSGGVSM 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3510 675 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 650 IPR045279 GO:0009736
Ssu1g3510 675 CDD REC_typeB_ARR-like 20 134 - -
Ssu1g3510 675 MobiDBLite consensus disorder prediction 152 171 - -
Ssu1g3510 675 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 201 260 IPR017930 -
Ssu1g3510 675 SMART REC_2 18 130 IPR001789 GO:0000160
Ssu1g3510 675 ProSiteProfiles Response regulatory domain profile. 19 134 IPR001789 GO:0000160
Ssu1g3510 675 MobiDBLite consensus disorder prediction 140 206 - -
Ssu1g3510 675 Pfam Response regulator receiver domain 20 128 IPR001789 GO:0000160
Ssu1g3510 675 Gene3D - 200 263 - -
Ssu1g3510 675 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 204 257 IPR006447 GO:0003677
Ssu1g3510 675 Coils Coil 172 192 - -
Ssu1g3510 675 PIRSF RR_ARR_type-B 1 673 IPR017053 GO:0003677|GO:0003700|GO:0009736
Ssu1g3510 675 Pfam Myb-like DNA-binding domain 206 256 IPR001005 -
Ssu1g3510 675 SUPERFAMILY CheY-like 17 140 IPR011006 -
Ssu1g3510 675 Gene3D - 17 154 - -
Ssu1g3510 675 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR10 1 650 - -
Ssu1g3510 675 SUPERFAMILY Homeodomain-like 201 261 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3510 Ssu-Chr1 89778535 89782263 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3510 1 433 Response Regulator Gene Family AT2G25180 55.056 4.93e-137 413
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Ssu1g3510 Response_reg 1.1e-22 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3510 - K14491 gmx:100809002 1127.85