Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3508 ATGGGATGTTATCACACGGGGGAGTTTTTGCCCTTCCTAGAAATCGAACCCCCAACCACTCGATGGGATGTTACAGGGGCTGACCCTGGTACCACTAAGCTAATTGGCCTGGTGGTGTCAAGTATCAACAAATTAGAAATTCTTAAACTACCAATTAGAAGGGGAGGAGGAAAGTACTCTGCAATGGAAACACTGAGCCACGAGGCTCCTCTCTATGATAACCTCTCCGCTGGAGAGACTCCTCCTAGTCCAAGCACACCATTGCAGAATCCACAGGAGAAGAAACAACTGTCTGTTGAGGAAGAAAAGGAGGCAAAAGCAGATACTTTATTGGATCTAAATGACCCTGGCGATGATTCTGCTATTGGGTTCAGTCCGGTGCTCAATCTCATCACCTGTTTGGACACGGATTTGTCATCAGAAAAACCCCATGGCTCAGAGCCACGAGTGTTCTCTTGCAACTACTGCCAGAGAAAGTTCTACAGTTCACAAGCTCTTGGGGGACACCAAAACGCCCACAAGAGGGAGAGGTCAGTTGCAAAGAGAGGTCAGAGATCAGGAACGCGCATGATGGCTTCAACAACAGCTTTTGGAATTCCCTTTCTTCATAATCACCTTCCCCGCCGTGCCGCTATGGCGTCTCTTCCCCTCCACGGTGCTTCTAGTAATAGACCACTTGGAATTCAGGCTCACTCGATGATTCAGaagccttcttcttcttctacttctcatttttcattcaatgGGTTTGGAAGCACTTTCGGACATCATGGGTGGTCAAGACCCCTTATTGATCAACAACGTCCTGGAATAGGGAAACTAACGgtgaaaaattgtcacaaaacatCACAAAGCAGTGTTGGGAGATTCGAAGTGGTGAAGACCATGCTCAATTCAGCGGCTAATGAAGAAATCAGTGGATATCTGCTTAGTGGAATTACTCGTTTGAAGACTAATCAAGAAGAAACGAAGCACCTTGACCTGTCCCTAAAGCTCTAG 999 0.4464 MGCYHTGEFLPFLEIEPPTTRWDVTGADPGTTKLIGLVVSSINKLEILKLPIRRGGGKYSAMETLSHEAPLYDNLSAGETPPSPSTPLQNPQEKKQLSVEEEKEAKADTLLDLNDPGDDSAIGFSPVLNLITCLDTDLSSEKPHGSEPRVFSCNYCQRKFYSSQALGGHQNAHKRERSVAKRGQRSGTRMMASTTAFGIPFLHNHLPRRAAMASLPLHGASSNRPLGIQAHSMIQKPSSSSTSHFSFNGFGSTFGHHGWSRPLIDQQRPGIGKLTVKNCHKTSQSSVGRFEVVKTMLNSAANEEISGYLLSGITRLKTNQEETKHLDLSLKL 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3508 332 MobiDBLite consensus disorder prediction 78 94 - -
Ssu1g3508 332 SUPERFAMILY beta-beta-alpha zinc fingers 148 178 IPR036236 -
Ssu1g3508 332 MobiDBLite consensus disorder prediction 72 105 - -
Ssu1g3508 332 ProSiteProfiles Zinc finger C2H2 type domain profile. 151 178 IPR013087 -
Ssu1g3508 332 Gene3D Classic Zinc Finger 134 197 - -
Ssu1g3508 332 MobiDBLite consensus disorder prediction 167 188 - -
Ssu1g3508 332 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 64 332 IPR044246 GO:0009788
Ssu1g3508 332 ProSitePatterns Zinc finger C2H2 type domain signature. 153 173 IPR013087 -
Ssu1g3508 332 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 64 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3508 Ssu-Chr1 89727258 89730657 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3508 101 332 C2H2 Transcription Factor Family AT5G10970 43.200 3.43e-46 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ssu1g3508 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3508 - - gmx:100783199 416.001
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0525 5 11407334 11408185 Ssu1g3508 1 89727258 89730657 PCT