Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3504 ATGAAAATCTCAATCTCTAACCTTCAATTTGTAATTGCAGCGATAACGATTCCGTTGTTCTTTTGGCATTTGATTTGTGGTTGTTGGCAGCCGTCGCACAAGACGTTCAGAATCAAGAAGAAGTTGGCGAAGAAGATGAGGCAGAACAGGCCCATCCCTTACTGGATCCGCATGAGGACCGACAACACCATCAGGTATTTTTGCTGTTATATTTCTTTGATTGGATGTTGGCTTTGTTGGAACTTGCAAAGGTGTTACCTTTGTTTCTTATTCTTTGAGGTAAGGCAGATTGACCTGTGTTAG 303 0.4191 MKISISNLQFVIAAITIPLFFWHLICGCWQPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYFCCYISLIGCWLCWNLQRCYLCFLFFEVRQIDLC 100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3504 100 SUPERFAMILY Ribosomal protein L39e 32 66 IPR023626 -
Ssu1g3504 100 Pfam Ribosomal L39 protein 38 66 IPR000077 GO:0003735|GO:0005840|GO:0006412
Ssu1g3504 100 PANTHER RIBOSOMAL PROTEIN L39E 19 68 - -
Ssu1g3504 100 Gene3D Ribosomal protein L39e 31 67 IPR023626 -
Ssu1g3504 100 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 28 - -
Ssu1g3504 100 PANTHER 60S RIBOSOMAL PROTEIN L39-2 19 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3504 Ssu-Chr1 89549045 89550042 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3504 31 68 Cytoplasmic Ribosomal Protein Gene Family AT4G31985 81.579 8.60e-18 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3504 K02924 - twl:119992691 80.4925