Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3503 ATGAAGGGGTCTGTTCCGATAATTGACAATAAGCAAATAGAAAAAACTACCAATAATTTTCAGGAAAGTAACATCTTGGGCGAGGGCGGTTTTGGATGTGTTTACAAGGCTCGCATGGATCATAACTCGGATGTTGCCGTCAAGAGACTACACTGTGAAACTCAACTTGCCGAGAGAGAATTCGAGAACGAGGTGAATTTGTTAAGTAAAATTCAGCATCCgaatataatttctttactgGGTTGTAGCATTGATGGTGACACGAGGTTTATTGTCTATGAGTTGATGCAAAATGGATCATTGGAAGCGCAGTTACATGGACCTTCTCATGGCTCGGCATTGACTTGGCACATGAGGATGAAGATTGCTCTTGACGCAGCAAGAGGATTAGAATATCTGCATGAGCACTGTCACCCTGCGGTGATCCATAGAGATATGAAATCTTCTAATATTCTCTTAGATGCAAACTTCAATGCCAagCTATCTGATTTTGGTCTTGCCATAACTGATGGGTCCCAAAGCAAGAAGAACATTAAACTATCGGGTACCTTGGGATACGTAGCACCGGAGTATCTTCTAGATGgTAAATTGAGTGATAAAAGTGATGTCTATGCTTTTGGGGTTGTGCTATTGGAGCTCCTATTAGGAAGGAAGCCAGTGGAAAAACTGGCACCAGCTCAATGCCAATCTATTGTCACATGGGCCATGCCACAGCTCACGGACAGGTCCAAGCTTCCGAGCATTGTGGATCCAGTGATTAAGAATACAATGGATTCCAAGCACTTATACCAGGTTGCTGCTGTAGCTGTGTTGTGTGTGCAACCTGAGCCAAGTTACCGCCCACTGATCACAGATGTTCTTCACTCACTTATCCCTCTTGTTCCCATTGAGCTTGGAGGAACACTAAGAGTTTCGCAAGTGACGCAGCATGCCTCTCTTGCTGATCCACCTGTGAATTCCCGTCATTGA 969 0.4345 MKGSVPIIDNKQIEKTTNNFQESNILGEGGFGCVYKARMDHNSDVAVKRLHCETQLAEREFENEVNLLSKIQHPNIISLLGCSIDGDTRFIVYELMQNGSLEAQLHGPSHGSALTWHMRMKIALDAARGLEYLHEHCHPAVIHRDMKSSNILLDANFNAKLSDFGLAITDGSQSKKNIKLSGTLGYVAPEYLLDGKLSDKSDVYAFGVVLLELLLGRKPVEKLAPAQCQSIVTWAMPQLTDRSKLPSIVDPVIKNTMDSKHLYQVAAVAVLCVQPEPSYRPLITDVLHSLIPLVPIELGGTLRVSQVTQHASLADPPVNSRH 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3503 322 ProSiteProfiles Protein kinase domain profile. 20 291 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g3503 322 ProSitePatterns Serine/Threonine protein kinases active-site signature. 141 153 IPR008271 GO:0004672|GO:0006468
Ssu1g3503 322 Pfam Protein kinase domain 20 288 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g3503 322 PANTHER OS01G0750732 PROTEIN 2 311 - -
Ssu1g3503 322 SUPERFAMILY Protein kinase-like (PK-like) 5 290 IPR011009 -
Ssu1g3503 322 Gene3D Transferase(Phosphotransferase) domain 1 96 295 - -
Ssu1g3503 322 SMART serkin_6 20 291 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g3503 322 Gene3D Phosphorylase Kinase; domain 1 2 95 - -
Ssu1g3503 322 CDD STKc_IRAK 26 293 - -
Ssu1g3503 322 PANTHER BNAA04G14780D PROTEIN 2 311 - -
Ssu1g3503 322 ProSitePatterns Protein kinases ATP-binding region signature. 26 48 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3503 Ssu-Chr1 89543766 89546237 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3503 7 317 Receptor kinase-like Gene Family AT3G58690 46.372 1.78e-95 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-X Ssu1g3503 Pkinase 3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3503 - - gmx:100784795 585.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0534 5 11714938 11719390 Ssu1g3503 1 89543766 89546237 PCT