Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3498 ATGTCTACCTCTGTTATCAATGGCGATGATTCACTCACTGGCCACATCATATCTACAACTATTGGAGGCAAAAATGGGGAACCCAAACAGACTATTAGTTACATGGCAGAACGGGTTGTAGGAACTGGATCATTTGGAATTGTTTTCCAGGCAAAATGCTTGGAAACTGGGGAGGCAGTGGCCattaaaaaggttttacaaGACAGAAGATACAAGAATCGTGAACTACAGTTAATGCGTGTGATGGATCACCCAAATGTGATCTCTCTGAAGCATTGTTTCTTTTCCACTACAAGTACAGATgaactttttcttaatttggtgATGGAATATGTTCCAGAGTCCATGTATAGAGTCTTAAAGCACTATACAAGTGCTAATCAAAGAATGCCTATCATCTACGTAAAACTTTATATGTACCAGATTTTCAGGGGGTTGGCTTATATCCACACTGTTCCCAAAGTTTGCCACAGAGATTTGAAGCCTCAAAATATACTGGTGGATCCTCTTACACATCAAGTGAAGCTATGTGATTTTGGAAGTGCAAAAGTTCTAGTCAAAGGTGAAGCTAATATATCATACATATGTTCACGATTCTATCGAGCTCCAGAACTTATATTTGGCGCCACTGAGTATACAAGTTCAATTGATATTTGGTCAGCTGGCTGTGTCCTTGCTGAACTTCTTTTGGGCCAGCCATTATTCCCTGGTGAAAATGCAGTAGACCAGCTCGTACATATTATAAAGGTGCTTGGCACACCCACTCGAGAGGAAGTACGCTGTATGAATCCCAATTACAATGACTTTAGGTTTCCACAGATAAAAGCACACCCATGGCACAAGATATTCCACAAAAAGATGCCTCCAGAAGCTATTGATCTTGCATCCCGGCTTTTGCAATACTCCCCAAGTCTCCGGTGCACTGCGCTTGAAGCATGTGCACATCCTTTCTTTGATGAACTTCGAGAACCCAATGCTCGCCTGCCAAATGGTCGACCATTTCCCCCTCTATTTAACTTCAAACAGGAATTATCCGGAGCATCTCCAGAGCTTGTTAATAAGTTGATACCTGATCACGTGAAGCGGCAAATAGGGCTACAATTTGGTCATCTGGCAGGATCGTGA 1125 0.4116 MSTSVINGDDSLTGHIISTTIGGKNGEPKQTISYMAERVVGTGSFGIVFQAKCLETGEAVAIKKVLQDRRYKNRELQLMRVMDHPNVISLKHCFFSTTSTDELFLNLVMEYVPESMYRVLKHYTSANQRMPIIYVKLYMYQIFRGLAYIHTVPKVCHRDLKPQNILVDPLTHQVKLCDFGSAKVLVKGEANISYICSRFYRAPELIFGATEYTSSIDIWSAGCVLAELLLGQPLFPGENAVDQLVHIIKVLGTPTREEVRCMNPNYNDFRFPQIKAHPWHKIFHKKMPPEAIDLASRLLQYSPSLRCTALEACAHPFFDELREPNARLPNGRPFPPLFNFKQELSGASPELVNKLIPDHVKRQIGLQFGHLAGS 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3498 374 SUPERFAMILY Protein kinase-like (PK-like) 33 343 IPR011009 -
Ssu1g3498 374 CDD STKc_GSK3 29 321 IPR039192 -
Ssu1g3498 374 Gene3D Phosphorylase Kinase; domain 1 19 113 - -
Ssu1g3498 374 PANTHER BNAANNG31110D PROTEIN 3 368 - -
Ssu1g3498 374 Gene3D Transferase(Phosphotransferase) domain 1 114 361 - -
Ssu1g3498 374 Pfam Protein kinase domain 34 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g3498 374 ProSitePatterns Protein kinases ATP-binding region signature. 40 64 IPR017441 GO:0005524
Ssu1g3498 374 ProSiteProfiles Protein kinase domain profile. 34 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g3498 374 SMART serkin_6 34 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g3498 374 ProSitePatterns Serine/Threonine protein kinases active-site signature. 155 167 IPR008271 GO:0004672|GO:0006468
Ssu1g3498 374 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 3 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3498 Ssu-Chr1 89456100 89459745 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3498 38 356 MAP Kinase Gene Family AT3G59790 35.329 1.81e-58 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Ssu1g3498 Pkinase 5.2e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3498 K14502 - gmx:100779909 754.977